Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WGK56_RS04055 Genome accession   NZ_CP148001
Coordinates   788737..789243 (-) Length   168 a.a.
NCBI ID   WP_015701477.1    Uniprot ID   -
Organism   Haemophilus influenzae strain AR2632     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 783737..794243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGK56_RS04020 (WGK56_04010) hpf 783964..784287 (-) 324 WP_005653397.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  WGK56_RS04025 (WGK56_04015) bamC 784477..785106 (-) 630 WP_038439193.1 outer membrane protein assembly factor BamC -
  WGK56_RS04030 (WGK56_04020) dapA 785217..786113 (-) 897 WP_061659718.1 4-hydroxy-tetrahydrodipicolinate synthase -
  WGK56_RS04035 (WGK56_04025) bcp 786214..786681 (+) 468 WP_015701479.1 thioredoxin-dependent thiol peroxidase -
  WGK56_RS04040 (WGK56_04030) exbB 786850..787302 (+) 453 WP_005648856.1 TonB-system energizer ExbB -
  WGK56_RS04045 (WGK56_04035) exbD 787306..787749 (+) 444 WP_005694050.1 TonB system transport protein ExbD -
  WGK56_RS04050 (WGK56_04040) - 787759..788559 (+) 801 WP_015701478.1 energy transducer TonB -
  WGK56_RS04055 (WGK56_04045) ssb 788737..789243 (-) 507 WP_015701477.1 single-stranded DNA-binding protein Machinery gene
  WGK56_RS04060 (WGK56_04050) uvrA 789398..792229 (+) 2832 WP_015701476.1 excinuclease ABC subunit UvrA Machinery gene

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18807.64 Da        Isoelectric Point: 5.2733

>NTDB_id=863536 WGK56_RS04055 WP_015701477.1 788737..789243(-) (ssb) [Haemophilus influenzae strain AR2632]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGFSNEMGSSPQPSYQARQTNNGGNYQSSRPAPQQAAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=863536 WGK56_RS04055 WP_015701477.1 788737..789243(-) (ssb) [Haemophilus influenzae strain AR2632]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTGTATGTGGAGGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGCCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTTCTCTAATGAGATGGGATCTTCACCACAACCTTCTTACCAAGCTCGTC
AAACTAATAATGGTGGTAATTATCAATCATCTCGTCCAGCGCCACAACAAGCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

68.306

100

0.744
  ssb Vibrio cholerae strain A1552

56.425

100

0.601
  ssb Neisseria meningitidis MC58

50.867

100

0.524
  ssb Neisseria gonorrhoeae MS11

50.289

100

0.518
  ssbA Bacillus subtilis subsp. subtilis str. 168

36

100

0.375