Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KI216_RS01540 Genome accession   NZ_AP024595
Coordinates   338977..341133 (+) Length   718 a.a.
NCBI ID   WP_005013200.1    Uniprot ID   -
Organism   Acinetobacter bouvetii strain JCM 18991     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333977..346133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI216_RS01520 (ACBO_02840) comM 335973..337031 (+) 1059 WP_005013208.1 pilus assembly protein PilM Machinery gene
  KI216_RS01525 (ACBO_02850) pilN 337031..337711 (+) 681 WP_005013206.1 PilN domain-containing protein Machinery gene
  KI216_RS01530 (ACBO_02860) pilO 337708..338433 (+) 726 WP_005013205.1 type 4a pilus biogenesis protein PilO Machinery gene
  KI216_RS01535 (ACBO_02870) pilP 338433..338960 (+) 528 WP_005013202.1 pilus assembly protein PilP Machinery gene
  KI216_RS01540 (ACBO_02880) pilQ 338977..341133 (+) 2157 WP_005013200.1 type IV pilus secretin PilQ Machinery gene
  KI216_RS01545 (ACBO_02890) aroK 341170..341715 (+) 546 WP_005013198.1 shikimate kinase AroK -
  KI216_RS01550 (ACBO_02900) aroB 341733..342812 (+) 1080 WP_005013196.1 3-dehydroquinate synthase -
  KI216_RS01555 (ACBO_02910) - 342831..343670 (+) 840 WP_005013193.1 hypothetical protein -

Sequence

Protein


Download         Length: 718 a.a.        Molecular weight: 77941.25 Da        Isoelectric Point: 5.4892

>NTDB_id=86298 KI216_RS01540 WP_005013200.1 338977..341133(+) (pilQ) [Acinetobacter bouvetii strain JCM 18991]
MKNSVKDFIFGDGNTMNQVFRQFSMGAVAIAVMQAASAQVSMTNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLI
LDFDKADQKLKQNSIPVATSEADSVDISSDAQRSRLTVNLANAGAFTTRVEGNTFILKINSATDAQVQPAIKAQAQGISN
IGFNRGANGEGQIVVDLLGGNTPVDVQQQGSKIVIRTLGNKVPAHLTRRLNVNDFATPVSIVDAHNDGSNGVITIQSSGN
FEYMAYQTDNKLTVSLKRPEDKNPLRPKASNHYTGKKISLDFQDIEVRRVLQLLADFTGINMVASDSVQGNITLRMKDVP
WDQALDIVLKTKNLDKRRNGNVIWIAPVSELIKSEDEEAKAIAQSIKLAPIQTEYIQLSYAKAADVLKLLEDSRNSKGAE
TNGTAGTNSLALESLLSPRGSAVADTRTNTLIVNDTAQNIDKVRKMIDLLDVSVKQVMVEARIVRASTEFSKQMGVKWGI
LSQGITNNNNLLVGGSDTTLWDLRDPDDEGKYTIQRPDNLNVDLGVTATGASKIAFGLISLSDFMLDLELSALQADGYGE
VISTPKVLTADKQQAKVASGTQIPYQSAEGGGQNAVSKTEFIDATLSLDVTPSITPEGRVQMNLQIKNNSIGGVTPTGQY
TINKNEINTNVLVDNGETIVLGGIFEQQTINNQTKVPFLGDLPYLGRLFRKDVKTDNKSELLIFVTPRIVNDSVVRNH

Nucleotide


Download         Length: 2157 bp        

>NTDB_id=86298 KI216_RS01540 WP_005013200.1 338977..341133(+) (pilQ) [Acinetobacter bouvetii strain JCM 18991]
ATGAAAAATAGTGTTAAAGATTTTATTTTTGGGGATGGCAATACAATGAATCAAGTGTTTCGTCAGTTTTCAATGGGTGC
AGTTGCAATAGCGGTCATGCAGGCTGCCAGCGCTCAAGTCAGTATGACGAATATCGTGCCAATGCAGATTCCAGGTCAGG
GCACTGAAATTCGTGTGATGTTTAATGGTTTGCCTCCGCAGCCTCAGGCTTATCAGCTTGAACAGCCTTCACGCCTGATT
TTAGATTTTGATAAAGCGGATCAGAAGCTAAAGCAAAATTCAATTCCGGTTGCAACCAGTGAAGCGGATTCGGTTGATAT
TAGTTCGGATGCACAGCGTTCACGCTTAACGGTGAATTTGGCCAATGCTGGCGCTTTCACAACTCGAGTTGAAGGCAATA
CCTTTATTCTGAAAATCAATTCAGCAACAGATGCCCAAGTACAGCCGGCAATAAAGGCTCAAGCGCAGGGTATTTCTAAT
ATTGGCTTTAATCGCGGAGCGAATGGCGAAGGCCAGATTGTCGTAGATTTGCTGGGGGGGAATACGCCAGTAGATGTACA
GCAGCAAGGCAGTAAAATTGTTATTCGTACATTGGGTAATAAAGTGCCTGCACATTTAACCCGCCGCTTGAATGTGAATG
ATTTTGCTACGCCTGTTTCGATTGTTGATGCGCATAATGATGGTAGCAATGGCGTTATTACCATTCAATCATCGGGTAAT
TTTGAGTATATGGCATATCAAACTGACAATAAGCTGACAGTTAGCCTTAAACGTCCTGAAGATAAGAATCCTTTACGCCC
TAAAGCGTCAAATCATTATACGGGTAAAAAGATTTCTCTAGATTTTCAAGATATTGAAGTGCGCCGTGTACTTCAATTGC
TGGCTGATTTTACTGGAATCAATATGGTTGCTTCTGATTCGGTGCAAGGCAATATAACCTTGCGTATGAAGGATGTGCCA
TGGGATCAAGCTCTAGACATTGTGTTAAAAACAAAAAACCTGGATAAGCGCCGTAATGGCAATGTGATTTGGATTGCTCC
TGTATCAGAATTAATTAAATCTGAAGATGAAGAGGCGAAAGCAATTGCGCAAAGTATTAAATTGGCGCCGATTCAAACTG
AATATATTCAATTGAGTTATGCAAAAGCTGCTGATGTTTTAAAATTGCTTGAAGATTCTCGCAATAGTAAAGGTGCTGAA
ACTAATGGTACGGCAGGCACAAACTCATTAGCATTAGAAAGCCTATTGAGCCCCCGTGGCAGTGCAGTCGCGGATACTCG
AACAAATACATTGATTGTTAACGATACTGCGCAGAATATTGATAAAGTCCGTAAAATGATCGATCTGCTGGATGTTTCTG
TTAAGCAAGTTATGGTTGAGGCTAGAATTGTCCGAGCATCAACTGAATTCAGTAAGCAAATGGGGGTGAAGTGGGGTATC
CTTTCACAAGGCATAACCAACAATAATAATCTGTTGGTTGGCGGCAGTGATACAACGCTATGGGATCTGCGTGATCCTGA
TGATGAAGGCAAGTATACAATTCAACGGCCAGATAATTTAAATGTAGATCTGGGTGTAACAGCAACAGGAGCAAGCAAGA
TTGCATTCGGGCTAATTAGCTTATCTGATTTTATGCTGGATCTTGAGCTTTCTGCATTACAGGCAGACGGTTACGGAGAG
GTAATTTCTACTCCGAAAGTTTTGACAGCTGACAAACAGCAAGCAAAAGTGGCATCTGGCACACAAATTCCGTATCAGTC
GGCTGAAGGTGGCGGTCAAAATGCTGTGTCAAAAACAGAGTTTATTGATGCAACTTTGAGCCTAGATGTAACACCAAGCA
TTACGCCGGAAGGCCGAGTTCAAATGAATCTGCAGATTAAAAATAATTCAATCGGCGGTGTGACTCCAACAGGACAGTAC
ACAATTAATAAAAATGAAATTAATACTAATGTATTGGTCGACAATGGTGAAACTATTGTGCTTGGGGGGATTTTTGAACA
GCAGACAATTAATAATCAAACAAAAGTTCCATTTTTAGGAGATCTTCCTTATCTAGGGCGTTTATTCCGTAAAGATGTGA
AGACCGATAATAAGAGCGAGTTGCTAATTTTTGTAACACCTCGAATTGTTAATGACAGTGTTGTTAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(374-456)

Secretin and TonB N terminus short domain (STN)

(304-347)

Bacterial type II and III secretion system protein (Secretin)

(552-710)

AMIN domain (AMIN)

(55-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.546

100

0.74
  pilQ Acinetobacter baumannii strain A118

73.407

100

0.738
  comQ Acinetobacter baylyi ADP1

70.522

98.747

0.696
  pilQ Pseudomonas aeruginosa PAK

41.418

98.189

0.407
  pilQ Legionella pneumophila strain Lp02

36.895

97.772

0.361

Multiple sequence alignment