Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KI216_RS01040 Genome accession   NZ_AP024595
Coordinates   235423..236910 (-) Length   495 a.a.
NCBI ID   WP_005013437.1    Uniprot ID   N9DFC2
Organism   Acinetobacter bouvetii strain JCM 18991     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 230423..241910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI216_RS01020 (ACBO_01910) ppa 230893..231429 (+) 537 WP_005013444.1 inorganic diphosphatase -
  KI216_RS01025 (ACBO_01920) - 231518..232843 (-) 1326 WP_005013442.1 OprD family outer membrane porin -
  KI216_RS01030 (ACBO_01930) - 233433..234200 (+) 768 WP_005013439.1 TorF family putative porin -
  KI216_RS01035 (ACBO_01940) - 234568..235332 (+) 765 WP_005013438.1 TorF family putative porin -
  KI216_RS01040 (ACBO_01950) comM 235423..236910 (-) 1488 WP_005013437.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KI216_RS01045 (ACBO_01960) - 236977..237204 (-) 228 WP_005013434.1 accessory factor UbiK family protein -
  KI216_RS01050 (ACBO_01970) glnK 237482..237820 (+) 339 WP_004650081.1 P-II family nitrogen regulator -
  KI216_RS01055 (ACBO_01980) - 237881..239275 (+) 1395 WP_005013432.1 ammonium transporter -
  KI216_RS01060 (ACBO_01990) nrdR 239428..239886 (+) 459 WP_005013430.1 transcriptional regulator NrdR -
  KI216_RS01065 (ACBO_02000) ribD 239910..240998 (+) 1089 WP_005013428.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54306.26 Da        Isoelectric Point: 7.7995

>NTDB_id=86288 KI216_RS01040 WP_005013437.1 235423..236910(-) (comM) [Acinetobacter bouvetii strain JCM 18991]
MSFAKIYSRGLLGLHAPLIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLAIALGILIASGQLPENAAEQLEFIGELALDGYLRPTTGTLSIAIACQQAKHQLILPEQNAQEASQLPNFEVFAATHL
KDVCDHLNQIAPLLQFNAVKPASSSSYQFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLSSILPPLNL
QENLEVASIYSIASAKHEFGHRPFRAPHHTASAIALVGGGSNPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESRE
IIISRASRQITFPANFQLIAAMNPCPCGYAFNQDARCQCSPDAIKRYQNRISGPLLDRIDLHIDVPPLQASELQDKQPTE
TSAQVRERVLKAYQQQIERQNFANMALSPKQLEQHAVLDSTAQNMMNMAQQRLNLSARAYHRVLRVARTIADLALEERIQ
TQHLSEALSYRGQVP

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=86288 KI216_RS01040 WP_005013437.1 235423..236910(-) (comM) [Acinetobacter bouvetii strain JCM 18991]
ATGTCTTTTGCCAAAATTTATAGCCGCGGGCTATTGGGCCTGCATGCCCCTTTAATAGAAGTTGAAGTCCATCTCAGCCA
AGGCTTGCCCTCCTTAACCATTGTTGGACTGGCGGAAGCGGCTGTTCGGGAAAGTAAAGACCGGGTCAGATCAGCCATTA
TCAACAGCGGATTTCAATTTCCCACCAAACGCTTAACCATTAATTTGGCGCCTGCTGATTTGCCCAAAGATGGCTCACGC
TTAGACCTCGCCATCGCTTTAGGCATTTTGATCGCATCTGGCCAATTGCCTGAAAACGCCGCAGAACAGCTGGAATTTAT
TGGCGAGCTGGCATTAGATGGCTATTTGCGCCCGACCACCGGCACTTTAAGCATCGCCATTGCCTGCCAGCAGGCGAAGC
ATCAGCTGATTTTGCCGGAGCAGAATGCGCAGGAAGCTTCTCAATTGCCTAATTTTGAAGTTTTTGCGGCCACCCATTTA
AAAGATGTTTGCGATCATTTGAATCAAATCGCGCCTTTACTGCAATTTAATGCAGTGAAGCCGGCATCTTCCTCCAGCTA
TCAATTTGATTTGGCTGATGTCAAAGGCCAGCTGCGGCCGCGCCGCGCATTGGAAATTGCCGCAGCCGGCGGGCACTCAC
TGCTGTTCCGCGGCCCGCCCGGAACAGGAAAAACGCTGCTGGCTTCACGCTTATCCAGCATTCTGCCGCCATTGAATTTG
CAGGAAAATCTGGAAGTCGCCAGCATCTATTCGATTGCCAGCGCAAAGCATGAATTTGGCCACCGCCCCTTCCGCGCACC
GCATCATACGGCGTCCGCCATTGCCCTGGTAGGCGGCGGCTCCAACCCCAAACCCGGTGAAATCACCTTAGCGCATTTAG
GCGTGCTGTTTTTAGATGAACTGCCGGAATTTGACCGGAAAGTGCTGGAAGTTTTACGCCAGCCGCTGGAATCCAGAGAA
ATTATTATCTCACGCGCATCGCGGCAGATTACGTTTCCAGCCAACTTTCAGCTGATTGCCGCCATGAACCCCTGCCCTTG
CGGCTATGCATTCAATCAGGATGCCCGCTGCCAGTGTTCCCCAGATGCGATTAAGCGCTATCAGAACCGGATTTCAGGGC
CCTTATTGGACAGGATTGATTTGCATATTGATGTCCCGCCGCTGCAGGCATCTGAACTGCAGGATAAACAGCCCACTGAA
ACCTCCGCCCAAGTGCGCGAACGGGTGTTAAAAGCCTATCAGCAGCAAATCGAACGGCAAAACTTCGCCAATATGGCGCT
CAGTCCCAAACAGCTGGAACAGCATGCTGTTCTGGACAGCACAGCGCAGAACATGATGAATATGGCGCAGCAGCGCCTGA
ATCTGTCTGCCCGAGCCTACCACCGTGTACTGCGGGTGGCGCGCACCATTGCTGATTTGGCTTTAGAAGAGCGCATTCAA
ACACAGCATCTTTCAGAGGCCTTGTCGTACAGGGGGCAAGTGCCATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9DFC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.59

100

0.533
  comM Glaesserella parasuis strain SC1401

51.889

100

0.527
  comM Legionella pneumophila strain ERS1305867

50.403

100

0.505
  comM Legionella pneumophila str. Paris

50.403

100

0.505
  comM Vibrio cholerae strain A1552

50.303

100

0.503
  comM Vibrio campbellii strain DS40M4

49.495

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.61

100

0.483

Multiple sequence alignment