Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   Q7653_RS02700 Genome accession   NZ_CP131616
Coordinates   523021..523494 (+) Length   157 a.a.
NCBI ID   WP_012503482.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2020C08-294     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 518021..528494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7653_RS02675 (Q7653_02695) dnaB 518454..519860 (+) 1407 WP_047918976.1 replicative DNA helicase -
  Q7653_RS02680 (Q7653_02700) pilH 520168..520830 (+) 663 WP_048339589.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q7653_RS02685 (Q7653_02705) pilV 520862..521470 (+) 609 WP_048339588.1 type IV pilus modification protein PilV Machinery gene
  Q7653_RS02690 (Q7653_02710) pilJ 521467..522429 (+) 963 WP_341948308.1 PilW family protein Machinery gene
  Q7653_RS02695 (Q7653_02715) pilK 522408..523019 (+) 612 WP_123768185.1 pilus assembly protein Machinery gene
  Q7653_RS02700 (Q7653_02720) pilL 523021..523494 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  Q7653_RS02705 (Q7653_02725) - 523564..523872 (-) 309 WP_025456241.1 AzlD family protein -
  Q7653_RS02710 (Q7653_02730) - 523869..524578 (-) 710 Protein_524 AzlC family ABC transporter permease -
  Q7653_RS02715 (Q7653_02735) dut 524744..525196 (+) 453 WP_003687923.1 dUTP diphosphatase -
  Q7653_RS02720 (Q7653_02740) dapC 525274..526461 (+) 1188 WP_123771553.1 succinyldiaminopimelate transaminase -
  Q7653_RS02725 (Q7653_02745) yaaA 526617..527396 (+) 780 WP_047917077.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17486.30 Da        Isoelectric Point: 9.9561

>NTDB_id=862790 Q7653_RS02700 WP_012503482.1 523021..523494(+) (pilL) [Neisseria gonorrhoeae strain 2020C08-294]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQIIKSKLETFVLGYKM
NPKIAKKYSVSVAFANTEKPRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRNATSAQTYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=862790 Q7653_RS02700 WP_012503482.1 523021..523494(+) (pilL) [Neisseria gonorrhoeae strain 2020C08-294]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGATCATCAAGAGCAAACTGGAAACATTTGTCTTAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCA
CTTCTGCCCAGACCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

91.72

100

0.917
  pilX Neisseria meningitidis 8013

85.35

100

0.854