Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Q7653_RS02680 Genome accession   NZ_CP131616
Coordinates   520168..520830 (+) Length   220 a.a.
NCBI ID   WP_048339589.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2020C08-294     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515168..525830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7653_RS02655 (Q7653_02675) cysT 515288..516126 (-) 839 Protein_513 sulfate ABC transporter permease subunit CysT -
  Q7653_RS02660 (Q7653_02680) - 516312..516644 (+) 333 WP_003687908.1 hypothetical protein -
  Q7653_RS02665 (Q7653_02685) - 516971..517480 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  Q7653_RS02670 (Q7653_02690) - 517710..518291 (-) 582 WP_003698180.1 superoxide dismutase -
  Q7653_RS02675 (Q7653_02695) dnaB 518454..519860 (+) 1407 WP_047918976.1 replicative DNA helicase -
  Q7653_RS02680 (Q7653_02700) pilH 520168..520830 (+) 663 WP_048339589.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q7653_RS02685 (Q7653_02705) pilV 520862..521470 (+) 609 WP_048339588.1 type IV pilus modification protein PilV Machinery gene
  Q7653_RS02690 (Q7653_02710) pilJ 521467..522429 (+) 963 WP_341948308.1 PilW family protein Machinery gene
  Q7653_RS02695 (Q7653_02715) pilK 522408..523019 (+) 612 WP_123768185.1 pilus assembly protein Machinery gene
  Q7653_RS02700 (Q7653_02720) pilL 523021..523494 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  Q7653_RS02705 (Q7653_02725) - 523564..523872 (-) 309 WP_025456241.1 AzlD family protein -
  Q7653_RS02710 (Q7653_02730) - 523869..524578 (-) 710 Protein_524 AzlC family ABC transporter permease -
  Q7653_RS02715 (Q7653_02735) dut 524744..525196 (+) 453 WP_003687923.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24297.78 Da        Isoelectric Point: 9.6053

>NTDB_id=862786 Q7653_RS02680 WP_048339589.1 520168..520830(+) (pilH) [Neisseria gonorrhoeae strain 2020C08-294]
MCTRKQQGFTLIELLIVMAIAAIMATIALPNMGGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NGCDFSKKGRGMLAFGDKNGNKAYDGDTKDVFLRNVVLNDTDDSRINYAFNHIAFGSSQPKADRVVWTFNQNGTFGYLPD
QNLKDNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=862786 Q7653_RS02680 WP_048339589.1 520168..520830(+) (pilH) [Neisseria gonorrhoeae strain 2020C08-294]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGGGCGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTTCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATGGATGTGATTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TACTAAGGATGTTTTTCTCCGCAACGTGGTATTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGAAAGCCGACCGTGTAGTTTGGACGTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGGATAATTCCAAATTTGTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTTGTCCTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

96.364

100

0.964