Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   WDM00_RS08595 Genome accession   NZ_CP147726
Coordinates   1889759..1890346 (-) Length   195 a.a.
NCBI ID   WP_001005366.1    Uniprot ID   -
Organism   Vibrio cholerae strain CNCTC 6536     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1884759..1895346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDM00_RS08575 (WDM00_08575) - 1884988..1886253 (-) 1266 WP_000835928.1 YdgA family protein -
  WDM00_RS08580 (WDM00_08580) - 1886475..1888430 (+) 1956 WP_095465910.1 ATP-binding protein -
  WDM00_RS08585 (WDM00_08585) - 1888427..1888924 (+) 498 WP_162811983.1 response regulator -
  WDM00_RS08590 (WDM00_08590) - 1889115..1889663 (+) 549 WP_001232641.1 hypothetical protein -
  WDM00_RS08595 (WDM00_08595) tfoX 1889759..1890346 (-) 588 WP_001005366.1 TfoX/Sxy family DNA transformation protein Regulator
  WDM00_RS08600 (WDM00_08600) - 1890724..1891644 (+) 921 WP_000019000.1 HDOD domain-containing protein -
  WDM00_RS08605 (WDM00_08605) - 1891665..1892570 (+) 906 WP_000948497.1 lysine exporter LysO family protein -
  WDM00_RS08610 (WDM00_08610) - 1892759..1893268 (+) 510 WP_000826868.1 hypothetical protein -
  WDM00_RS08615 (WDM00_08615) panP 1893378..1895024 (+) 1647 WP_000253195.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22816.03 Da        Isoelectric Point: 6.9718

>NTDB_id=862787 WDM00_RS08595 WP_001005366.1 1889759..1890346(-) (tfoX) [Vibrio cholerae strain CNCTC 6536]
MNEQQFFDYVTKFGAYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELLALGCEKYRHVKKQTTATVNYYDITE
LYEQHHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVRQAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=862787 WDM00_RS08595 WP_001005366.1 1889759..1890346(-) (tfoX) [Vibrio cholerae strain CNCTC 6536]
ATGAATGAGCAACAGTTTTTCGACTACGTAACTAAGTTTGGCGCCTACCAAAAACGCTCGATGTTTGGTGGTATTGGCTT
GTTTCAACACGACGCTATGTATGTGTTGGTCAGTGAAGACCGCATTTTTGTGCGTGGTGGAGAAGAGCTCGACCCTGAGC
TCTTGGCCTTAGGGTGCGAGAAATATCGCCATGTTAAAAAACAGACAACGGCAACCGTAAACTATTACGACATCACTGAA
CTGTATGAGCAACATCACCCTGAGCTAGACTCGATCATTGAACGCTCGATTCAGTTTTCTGTGAATCAGCGGGAATTTCA
ACGCTCAGCAGCCAGTCGTCGTCTACGGGATTTACCCAATATGCAACTGACTTTGGAGCGTATGGTAAAAAAAGCGGGCA
TTGACGATGTGGAAACTTTTATGAGCCTCGGTGCGCCAGAAGTGTTTAATAAGGTGCGTCAAGCTTATGGAAGTGATGTC
GATGTAAAACTACTGTGGAAGTTTGCGGGTGCGATTGAAGGCATTCACTGGAAACTGCTGCAAGAGCCGCGTAAGCGCCA
ACTGTTAGAAAGTTGTCAGCAGCGTTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.