Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   Q7653_RS02695 Genome accession   NZ_CP131616
Coordinates   522408..523019 (+) Length   203 a.a.
NCBI ID   WP_123768185.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2020C08-294     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517408..528019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7653_RS02670 (Q7653_02690) - 517710..518291 (-) 582 WP_003698180.1 superoxide dismutase -
  Q7653_RS02675 (Q7653_02695) dnaB 518454..519860 (+) 1407 WP_047918976.1 replicative DNA helicase -
  Q7653_RS02680 (Q7653_02700) pilH 520168..520830 (+) 663 WP_048339589.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q7653_RS02685 (Q7653_02705) pilV 520862..521470 (+) 609 WP_048339588.1 type IV pilus modification protein PilV Machinery gene
  Q7653_RS02690 (Q7653_02710) pilJ 521467..522429 (+) 963 WP_341948308.1 PilW family protein Machinery gene
  Q7653_RS02695 (Q7653_02715) pilK 522408..523019 (+) 612 WP_123768185.1 pilus assembly protein Machinery gene
  Q7653_RS02700 (Q7653_02720) pilL 523021..523494 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  Q7653_RS02705 (Q7653_02725) - 523564..523872 (-) 309 WP_025456241.1 AzlD family protein -
  Q7653_RS02710 (Q7653_02730) - 523869..524578 (-) 710 Protein_524 AzlC family ABC transporter permease -
  Q7653_RS02715 (Q7653_02735) dut 524744..525196 (+) 453 WP_003687923.1 dUTP diphosphatase -
  Q7653_RS02720 (Q7653_02740) dapC 525274..526461 (+) 1188 WP_123771553.1 succinyldiaminopimelate transaminase -
  Q7653_RS02725 (Q7653_02745) yaaA 526617..527396 (+) 780 WP_047917077.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22031.95 Da        Isoelectric Point: 8.0862

>NTDB_id=862789 Q7653_RS02695 WP_123768185.1 522408..523019(+) (pilK) [Neisseria gonorrhoeae strain 2020C08-294]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVQGKPTVEAVKRPCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=862789 Q7653_RS02695 WP_123768185.1 522408..523019(+) (pilK) [Neisseria gonorrhoeae strain 2020C08-294]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTCCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956