Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   WDM00_RS08815 Genome accession   NZ_CP147726
Coordinates   1936318..1937667 (-) Length   449 a.a.
NCBI ID   WP_033929560.1    Uniprot ID   -
Organism   Vibrio cholerae strain CNCTC 6536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1931318..1942667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDM00_RS08800 (WDM00_08800) bioB 1932333..1933385 (-) 1053 WP_142737355.1 biotin synthase BioB -
  WDM00_RS08805 (WDM00_08805) bioA 1933518..1934798 (+) 1281 WP_032473478.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -
  WDM00_RS08810 (WDM00_08810) serS 1934907..1936214 (-) 1308 WP_000887349.1 serine--tRNA ligase -
  WDM00_RS08815 (WDM00_08815) rarA 1936318..1937667 (-) 1350 WP_033929560.1 replication-associated recombination protein A Machinery gene
  WDM00_RS08820 (WDM00_08820) lolA 1937692..1938288 (-) 597 WP_142737356.1 outer membrane lipoprotein chaperone LolA -
  WDM00_RS08825 (WDM00_08825) - 1938384..1939004 (-) 621 WP_001109754.1 YecA family protein -
  WDM00_RS08830 (WDM00_08830) dusC 1939170..1940141 (+) 972 WP_142737357.1 tRNA dihydrouridine(16) synthase DusC -
  WDM00_RS08835 (WDM00_08835) - 1940174..1941643 (-) 1470 WP_114762807.1 sensor domain-containing diguanylate cyclase -
  WDM00_RS08840 (WDM00_08840) - 1941811..1942605 (-) 795 WP_000620372.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49803.29 Da        Isoelectric Point: 6.0310

>NTDB_id=862789 WDM00_RS08815 WP_033929560.1 1936318..1937667(-) (rarA) [Vibrio cholerae strain CNCTC 6536]
MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAEVE
RVSAVTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARV
YKLTSLNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVSGDARMSLNYLELLYDMAREDDQGRKQIDLPLLAE
VAGEKVSRFDNKGDIWYDLISAVHKSIRGSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPRGMQVALSAWD
CFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALSDAHNLPEFEVPPHLRNAPTRLMKDLGYGEEYRYAHDEPGAY
AAGECYFPPEMSGTRYYQPTQRGLETKIAEKLAYLADLNAKSPQKRYEK

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=862789 WDM00_RS08815 WP_033929560.1 1936318..1937667(-) (rarA) [Vibrio cholerae strain CNCTC 6536]
GTGAGTAATTACAGCTTAGATTTTTCCGGCGACGAAGATTTTCGTCCGTTAGCTGCTCGTATGCGTCCACAAACCGTGGA
GCAGTATATTGGTCAGCAACACATCTTAGGGCCGGGAAAACCGCTACGCCGTGCATTAGAAGCGGGGCATATTCACTCGA
TGATTCTTTGGGGACCTCCGGGCACCGGAAAAACCACTTTAGCCGAAGTGGCAGCCAACTACGCGAATGCGGAAGTGGAA
CGCGTATCGGCAGTGACGTCCGGAGTCAAAGAGATCCGTGCCGCGATCGAAAAAGCGCGTGAGAACAAACTCAGTGGTCG
ACGCACTATTTTGTTTGTCGACGAAGTCCATCGCTTTAATAAATCGCAGCAAGATGCGTTTTTGCCGCATATTGAAGATG
GTACGGTCACTTTTATTGGCGCAACCACGGAAAACCCTTCTTTTGAGCTTAATAACGCGCTGCTTTCCCGCGCGCGGGTT
TATAAGCTCACCTCACTCAATCAACAAGAAATTCTGCAAGCTCTGCATCAAGCGATTGCCGATACTGAACGCGGGCTTGG
CAAAGTGGCGGCGGTATTTGCTGATAACGTGTTGGATCGCCTAGCAGAGCTGGTCAGTGGCGATGCGCGCATGTCGCTCA
ATTATCTTGAGCTGCTGTACGACATGGCTCGCGAAGATGATCAGGGACGCAAGCAGATTGATCTGCCTTTATTGGCTGAG
GTCGCTGGTGAAAAAGTGTCGCGCTTTGATAACAAGGGCGATATTTGGTATGACCTGATTTCCGCTGTACACAAGTCGAT
TCGAGGATCTGATCCCGATGCGGCTCTGTATTGGGCGGCGCGGATGATTTCCGCAGGCTGTGACCCTTTGTATATCGCGC
GCCGTCTGCTCGCGATTGCCTCTGAAGATGTTGGTAATGCCGACCCGCGGGGCATGCAAGTGGCGCTTTCTGCATGGGAT
TGCTTTACCCGCGTGGGGCCTGCAGAAGGCGAGCGCGCGATTGCTCAAGCGATTGTCTACCTCGCCTGCGCACCGAAAAG
CAATGCGGTGTACACCGCGTGGAAACAAGCGCTGTCGGATGCGCATAATCTGCCTGAGTTTGAAGTACCGCCGCATCTGC
GTAATGCCCCAACGCGATTGATGAAAGATCTCGGTTATGGTGAGGAATACCGTTACGCCCATGATGAACCGGGCGCTTAT
GCTGCAGGGGAGTGCTATTTCCCACCAGAAATGAGTGGAACTCGCTACTATCAGCCTACTCAACGCGGGCTAGAAACTAA
GATTGCTGAAAAGTTAGCGTATCTGGCGGATTTGAACGCAAAAAGCCCACAAAAGCGCTATGAAAAGTAG

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(269-435)

ATPase family associated with various cellular activities (AAA) (AAA)

(54-159)

AAA C-terminal domain (AAA_assoc_2)

(192-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.512

91.314

0.361