Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   WDM00_RS05330 Genome accession   NZ_CP147726
Coordinates   1137112..1138116 (+) Length   334 a.a.
NCBI ID   WP_000568494.1    Uniprot ID   -
Organism   Vibrio cholerae strain CNCTC 6536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1132112..1143116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDM00_RS05305 (WDM00_05305) lpxH 1132936..1133676 (-) 741 WP_193836570.1 UDP-2,3-diacylglucosamine diphosphatase -
  WDM00_RS05310 (WDM00_05310) - 1133717..1134211 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  WDM00_RS05315 (WDM00_05315) cysS 1134357..1135736 (+) 1380 WP_116671955.1 cysteine--tRNA ligase -
  WDM00_RS05320 (WDM00_05320) ruvC 1135824..1136345 (+) 522 WP_193836571.1 crossover junction endodeoxyribonuclease RuvC -
  WDM00_RS05325 (WDM00_05325) ruvA 1136442..1137056 (+) 615 WP_000580358.1 Holliday junction branch migration protein RuvA Machinery gene
  WDM00_RS05330 (WDM00_05330) ruvB 1137112..1138116 (+) 1005 WP_000568494.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  WDM00_RS05335 (WDM00_05335) cydA 1138575..1140161 (+) 1587 WP_000568053.1 cytochrome ubiquinol oxidase subunit I -
  WDM00_RS05340 (WDM00_05340) cydB 1140179..1141315 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  WDM00_RS05345 (WDM00_05345) cydX 1141328..1141435 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  WDM00_RS05350 (WDM00_05350) ybgE 1141428..1141745 (+) 318 WP_001286619.1 cyd operon protein YbgE -
  WDM00_RS05355 (WDM00_05355) ybgC 1141914..1142321 (+) 408 WP_001091290.1 tol-pal system-associated acyl-CoA thioesterase -
  WDM00_RS05360 (WDM00_05360) tolQ 1142311..1142994 (+) 684 WP_000123083.1 protein TolQ -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37286.69 Da        Isoelectric Point: 5.0460

>NTDB_id=862776 WDM00_RS05330 WP_000568494.1 1137112..1138116(+) (ruvB) [Vibrio cholerae strain CNCTC 6536]
MIEADRLIAPTSNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=862776 WDM00_RS05330 WP_000568494.1 1137112..1138116(+) (ruvB) [Vibrio cholerae strain CNCTC 6536]
ATGATAGAAGCCGATCGTTTAATTGCTCCAACCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAAAAAGCTTGCCGATTACCAAGGTCAGGATCATGTTCGTGATCAGATGGAAATCTTCATTCAGGCGGCACAAATGCGCC
AAGAAGCCTTAGACCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGCTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTTTAAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCTGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCACTGCGTGACCGATTTGGGATTGTGCAACGATTGGAGTATTACAA
AGTCGCCGATTTACAACACATAGTGCAACGTAGTGCGCAGTGTCTCGGTCTTTCGATGGATAGTGAGGGCGCTCTTGAAG
TGGCTCGCCGTGCACGTGGAACCCCACGGATTGCCAATCGCCTGCTGCGCCGGGTACGAGATTATGCCGAAGTAAAAGGG
GATGGGCACATTTGTGCGCAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCTATTGGCG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAGGGTTATTTACAACGTACACCACGCGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)

RuvB AAA lid domain (AAA_lid_4)

(186-259)

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.606

98.802

0.599
  ruvB Streptococcus pneumoniae TIGR4

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae R6

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae D39

59.937

94.91

0.569
  ruvB Synechocystis sp. PCC 6803

54.348

96.407

0.524
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494