Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   WDM00_RS05325 Genome accession   NZ_CP147726
Coordinates   1136442..1137056 (+) Length   204 a.a.
NCBI ID   WP_000580358.1    Uniprot ID   -
Organism   Vibrio cholerae strain CNCTC 6536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1131442..1142056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDM00_RS05300 (WDM00_05300) - 1131626..1132840 (-) 1215 WP_001905415.1 EAL and HDOD domain-containing protein -
  WDM00_RS05305 (WDM00_05305) lpxH 1132936..1133676 (-) 741 WP_193836570.1 UDP-2,3-diacylglucosamine diphosphatase -
  WDM00_RS05310 (WDM00_05310) - 1133717..1134211 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  WDM00_RS05315 (WDM00_05315) cysS 1134357..1135736 (+) 1380 WP_116671955.1 cysteine--tRNA ligase -
  WDM00_RS05320 (WDM00_05320) ruvC 1135824..1136345 (+) 522 WP_193836571.1 crossover junction endodeoxyribonuclease RuvC -
  WDM00_RS05325 (WDM00_05325) ruvA 1136442..1137056 (+) 615 WP_000580358.1 Holliday junction branch migration protein RuvA Machinery gene
  WDM00_RS05330 (WDM00_05330) ruvB 1137112..1138116 (+) 1005 WP_000568494.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  WDM00_RS05335 (WDM00_05335) cydA 1138575..1140161 (+) 1587 WP_000568053.1 cytochrome ubiquinol oxidase subunit I -
  WDM00_RS05340 (WDM00_05340) cydB 1140179..1141315 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  WDM00_RS05345 (WDM00_05345) cydX 1141328..1141435 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  WDM00_RS05350 (WDM00_05350) ybgE 1141428..1141745 (+) 318 WP_001286619.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21994.67 Da        Isoelectric Point: 5.0954

>NTDB_id=862775 WDM00_RS05325 WP_000580358.1 1136442..1137056(+) (ruvA) [Vibrio cholerae strain CNCTC 6536]
MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVSERALFREVIKANG
VGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=862775 WDM00_RS05325 WP_000580358.1 1136442..1137056(+) (ruvA) [Vibrio cholerae strain CNCTC 6536]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAGTTACCTCCTCAAATTTTGATTGAGGTCGGTGGTATTGGCTATGA
AGTGCAAATGCCGATGAGCTGTATTTATGAACTGCCGAATATTGGGGAAGAAGCCATCATTTATACCCACTTTGTAGTTC
GAGAAGATGCACAGCTACTTTATGGCTTTAATACCGTTAGCGAACGCGCTCTGTTTCGTGAAGTAATCAAAGCCAATGGC
GTAGGGCCGAAAATGGGGCTTGCGATCCTCTCTGGCATGACAGCCAATCAGTTTGTTAGTTGTGTTGAAAAAGAAGACAT
ATCTACACTGATCAAACTACCGGGTGTTGGCAAGAAAACAGCAGAACGCTTGGTTGTAGAAATGAAAGATCGTCTAAAAG
GATGGGGGGCTGGTGATCTCTTTACGCCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTAGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATCCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

Helix-hairpin-helix domain (HHH_5)

(72-130)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363