Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KI228_RS21975 Genome accession   NZ_AP024585
Coordinates   4654600..4656120 (+) Length   506 a.a.
NCBI ID   WP_061069423.1    Uniprot ID   -
Organism   Citrobacter amalonaticus strain JCM 1661     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4649600..4661120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI228_RS21950 (CIAM_42830) ilvE 4651155..4652084 (-) 930 WP_042998773.1 branched-chain-amino-acid transaminase -
  KI228_RS21955 (CIAM_42840) ilvM 4652103..4652366 (-) 264 WP_042326055.1 acetolactate synthase 2 small subunit -
  KI228_RS21960 (CIAM_42850) ilvG 4652363..4654009 (-) 1647 WP_044258256.1 acetolactate synthase 2 catalytic subunit -
  KI228_RS21965 ilvX 4654012..4654062 (-) 51 WP_193762813.1 peptide IlvX -
  KI228_RS21970 ilvL 4654149..4654247 (-) 99 WP_001311244.1 ilv operon leader peptide -
  KI228_RS21975 (CIAM_42860) comM 4654600..4656120 (+) 1521 WP_061069423.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KI228_RS21980 (CIAM_42870) maoP 4656146..4656484 (-) 339 WP_042326051.1 macrodomain Ori organization protein MaoP -
  KI228_RS21985 (CIAM_42880) hdfR 4656603..4657436 (+) 834 WP_042998770.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55050.90 Da        Isoelectric Point: 7.3290

>NTDB_id=86203 KI228_RS21975 WP_061069423.1 4654600..4656120(+) (comM) [Citrobacter amalonaticus strain JCM 1661]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTLVGLPETTVKEARDRVRSAIINSGYDFPAKKITINLAPADLPKEGGR
YDLPIAVALLVASEQLTTHKLDQYELVGELALTGVLRGVPGAISSATEAIRVGRGIIVAKENENEVGLIEGEGCLVADHL
QAVCAFLEGKHDLSHPVVNNDTISVSSDDLSDIIGQEQGKRSLEITAAGGHNLLLVGPPGTGKTMLASRLNGLLPALSNE
EALESAAILSLVNSTSVQKLWKQRPFRSPHHSASLTAMVGGGTIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRNTPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQPGVKG
ENSFTVKQRVIGARERQHKRQGKLNAHLQNREIREHCPLADEDAQWLEETLLHLGLSIRAWQRLLKVSRTIADLAQAEHI
SRRHLQEAVSYRAIDRLLAHLQKQLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=86203 KI228_RS21975 WP_061069423.1 4654600..4656120(+) (comM) [Citrobacter amalonaticus strain JCM 1661]
ATGTCACTGTCAATTGTTCATACACGCGCTGCGCTGGGTGTCAATGCACCGGCGATTACTATCGAAGTGCATATCAGCAA
CGGTTTACCCGGTTTAACACTGGTGGGGTTACCAGAAACGACCGTCAAAGAGGCGCGCGACCGGGTACGCAGCGCGATCA
TTAATAGCGGATATGACTTTCCCGCAAAGAAAATCACCATCAATCTCGCCCCTGCCGATCTTCCCAAAGAGGGCGGGAGA
TATGATTTACCTATTGCTGTGGCGCTTCTGGTTGCCTCTGAGCAGCTTACAACCCATAAACTCGACCAATATGAGTTAGT
GGGTGAATTAGCGCTTACAGGTGTGTTACGCGGCGTTCCCGGCGCCATATCCAGCGCAACCGAGGCGATACGGGTGGGAA
GGGGCATTATCGTGGCAAAAGAGAACGAAAACGAAGTCGGGCTGATTGAGGGTGAAGGATGTCTGGTTGCCGATCATCTA
CAAGCTGTCTGTGCCTTCCTGGAAGGAAAACATGACCTTAGCCATCCTGTTGTTAACAACGACACTATCAGTGTGTCATC
TGATGATCTCAGCGATATTATTGGTCAGGAGCAAGGGAAGCGCAGCCTTGAGATCACCGCCGCAGGTGGCCACAATCTGC
TATTAGTTGGCCCACCGGGTACGGGGAAAACGATGCTTGCCAGCCGTCTTAATGGCCTGTTGCCGGCATTAAGTAACGAA
GAAGCCCTGGAAAGCGCCGCTATCCTCAGTCTGGTTAACTCGACTAGCGTGCAAAAGTTATGGAAACAACGACCTTTTCG
CTCACCACACCACAGCGCATCCCTGACCGCCATGGTTGGTGGCGGAACTATCCCCGCACCAGGCGAAATTTCTTTGGCAC
ACAACGGCATACTGTTTCTTGATGAGCTGCCTGAGTTTGAACGACGCACATTAGATGCTCTACGTGAACCGATAGAGTCT
GGTCAGATCCACCTTTCGCGTACGCGCGCTAAGATCACCTATCCTGCGCGCTTTCAATTGGTAGCGGCAATGAATCCCAG
TCCCACCGGTCATTATCAGGGCAACCATAACCGCAATACACCTGAACAGACATTACGCTATCTCAGTCGGCTATCGGGCC
CCTTTCTGGACCGCTTTGATCTTTCTCTTGAGATCCCTCTCCCACCGCCAGGCATACTCAGCCAGCCCGGTGTAAAGGGA
GAAAACAGCTTTACGGTTAAACAGCGGGTCATTGGTGCGCGGGAACGTCAGCATAAACGCCAGGGCAAATTGAATGCACA
CCTGCAAAACAGGGAGATACGTGAACACTGCCCATTAGCAGATGAAGACGCGCAGTGGCTTGAAGAGACCCTCCTCCATC
TTGGATTGTCTATACGCGCCTGGCAGCGGTTATTAAAGGTATCGAGGACTATTGCCGATCTCGCGCAAGCCGAACACATT
TCACGAAGACACTTGCAGGAAGCGGTCAGTTACCGGGCGATAGATCGTCTGCTTGCTCACCTGCAGAAACAACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.198

99.802

0.601
  comM Haemophilus influenzae Rd KW20

59.486

100

0.595
  comM Glaesserella parasuis strain SC1401

58.546

100

0.589
  comM Vibrio campbellii strain DS40M4

58.416

99.802

0.583
  comM Legionella pneumophila str. Paris

46.881

98.221

0.46
  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.141

99.407

0.429

Multiple sequence alignment