Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   Q6357_RS07990 Genome accession   NZ_CP130888
Coordinates   1634005..1635132 (+) Length   375 a.a.
NCBI ID   WP_110487132.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 28M1-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1629005..1640132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6357_RS07970 (Q6357_07970) - 1629760..1630428 (-) 669 WP_017357860.1 YigZ family protein -
  Q6357_RS07975 (Q6357_07975) degS 1630650..1631825 (+) 1176 WP_024719243.1 sensor histidine kinase Regulator
  Q6357_RS07980 (Q6357_07980) degU 1631890..1632579 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  Q6357_RS07985 (Q6357_07985) - 1632791..1633633 (+) 843 WP_024719242.1 DegV family protein -
  Q6357_RS07990 (Q6357_07990) comFA 1634005..1635132 (+) 1128 WP_110487132.1 DEAD/DEAH box helicase Machinery gene
  Q6357_RS07995 (Q6357_07995) - 1635197..1635490 (+) 294 WP_008348267.1 late competence development ComFB family protein -
  Q6357_RS08000 (Q6357_08000) - 1635451..1636173 (+) 723 WP_304717666.1 ComF family protein -
  Q6357_RS08005 (Q6357_08005) - 1636230..1636649 (+) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  Q6357_RS08010 (Q6357_08010) flgM 1636729..1636992 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  Q6357_RS08015 (Q6357_08015) - 1637011..1637493 (+) 483 WP_007499977.1 flagellar protein FlgN -
  Q6357_RS08020 (Q6357_08020) flgK 1637509..1639029 (+) 1521 WP_058336981.1 flagellar hook-associated protein FlgK -
  Q6357_RS08025 (Q6357_08025) flgL 1639038..1639949 (+) 912 WP_008348257.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 42895.82 Da        Isoelectric Point: 10.3428

>NTDB_id=861533 Q6357_RS07990 WP_110487132.1 1634005..1635132(+) (comFA) [Bacillus altitudinis strain 28M1-1]
MLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYALNNGM
SVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDERLQF
AVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLHEHITK
KKRVLLFVPSISTMKKVTHILQGQDVNVEGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAESPIF
TESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEEEFSEK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=861533 Q6357_RS07990 WP_110487132.1 1634005..1635132(+) (comFA) [Bacillus altitudinis strain 28M1-1]
ATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAGACAAGTTGAATT
AACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAAACAAATTTGATC
TGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAATAAAATATGCGCTAAATAACGGAATG
AGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTGGAGCTTGAACCTCGAATGAGAAAGGCATTTCAAGGACTGAA
TATAGCTGCACTTTATGGTGGGAGTTCTCAAAGGTTTCAAATGGCACCGCTTATGATCGCTACAACCCATCAGCTAATGA
GATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTTGATGCTTTTCCTTATTCAATGGATGAACGGCTTCAGTTT
GCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAATGCAAAAAGATGT
TGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTACCAACATTTCAATGGG
TTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAACATATCACAAAG
AAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACCCATATTCTTCAAGGTCAAGATGTAAA
TGTAGAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGGTACGATGTATTGG
TTACAACAACTATTCTAGAAAGAGGCGTTACGATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAATCTCCTATTTTT
ACAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGTGTACTTTTTTCA
TTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAGAAGAGTTTTCTG
AAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(32-180)

Helicase conserved C-terminal domain (Helicase_C)

(236-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

56.25

98.133

0.552
  comFA/cflA Streptococcus pneumoniae Rx1

41.243

94.4

0.389
  comFA/cflA Streptococcus pneumoniae D39

41.243

94.4

0.389
  comFA/cflA Streptococcus pneumoniae R6

41.243

94.4

0.389
  comFA/cflA Streptococcus pneumoniae TIGR4

40.96

94.4

0.387
  comFA/cflA Streptococcus mitis NCTC 12261

40.678

94.4

0.384
  comFA Latilactobacillus sakei subsp. sakei 23K

38.859

98.133

0.381
  comFA/cflA Streptococcus mitis SK321

39.548

94.4

0.373
  comFA Lactococcus lactis subsp. cremoris KW2

37.705

97.6

0.368