Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   Q6357_RS07980 Genome accession   NZ_CP130888
Coordinates   1631890..1632579 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain 28M1-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1626890..1637579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6357_RS07960 (Q6357_07960) - 1627573..1628640 (+) 1068 WP_007499956.1 glycosyltransferase family 4 protein -
  Q6357_RS07965 (Q6357_07965) - 1628678..1629775 (-) 1098 Protein_1513 LCP family protein -
  Q6357_RS07970 (Q6357_07970) - 1629760..1630428 (-) 669 WP_017357860.1 YigZ family protein -
  Q6357_RS07975 (Q6357_07975) degS 1630650..1631825 (+) 1176 WP_024719243.1 sensor histidine kinase Regulator
  Q6357_RS07980 (Q6357_07980) degU 1631890..1632579 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  Q6357_RS07985 (Q6357_07985) - 1632791..1633633 (+) 843 WP_024719242.1 DegV family protein -
  Q6357_RS07990 (Q6357_07990) comFA 1634005..1635132 (+) 1128 WP_110487132.1 DEAD/DEAH box helicase Machinery gene
  Q6357_RS07995 (Q6357_07995) - 1635197..1635490 (+) 294 WP_008348267.1 late competence development ComFB family protein -
  Q6357_RS08000 (Q6357_08000) - 1635451..1636173 (+) 723 WP_304717666.1 ComF family protein -
  Q6357_RS08005 (Q6357_08005) - 1636230..1636649 (+) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  Q6357_RS08010 (Q6357_08010) flgM 1636729..1636992 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  Q6357_RS08015 (Q6357_08015) - 1637011..1637493 (+) 483 WP_007499977.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=861532 Q6357_RS07980 WP_008348273.1 1631890..1632579(+) (degU) [Bacillus altitudinis strain 28M1-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=861532 Q6357_RS07980 WP_008348273.1 1631890..1632579(+) (degU) [Bacillus altitudinis strain 28M1-1]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATTTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996