Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q5H80_RS14320 Genome accession   NZ_CP130748
Coordinates   3208094..3209617 (-) Length   507 a.a.
NCBI ID   WP_304566016.1    Uniprot ID   -
Organism   Vibrio sp. SNU_ST1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3203094..3214617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5H80_RS14295 (Q5H80_14295) - 3203152..3203415 (+) 264 WP_304566009.1 YihD family protein -
  Q5H80_RS14300 (Q5H80_14300) ccoG 3203742..3205160 (+) 1419 WP_304566011.1 cytochrome c oxidase accessory protein CcoG -
  Q5H80_RS14305 (Q5H80_14305) - 3205235..3206221 (+) 987 WP_304569424.1 serine/threonine protein kinase -
  Q5H80_RS14310 (Q5H80_14310) - 3206275..3206874 (+) 600 WP_304566013.1 thiol:disulfide interchange protein DsbA/DsbL -
  Q5H80_RS14315 (Q5H80_14315) - 3207014..3207967 (+) 954 WP_304566015.1 DUF2860 domain-containing protein -
  Q5H80_RS14320 (Q5H80_14320) comM 3208094..3209617 (-) 1524 WP_304566016.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q5H80_RS14325 (Q5H80_14325) ilvG 3210089..3211735 (+) 1647 WP_304566018.1 acetolactate synthase 2 catalytic subunit -
  Q5H80_RS14330 (Q5H80_14330) ilvM 3211737..3212021 (+) 285 WP_017111739.1 acetolactate synthase 2 small subunit -
  Q5H80_RS14335 (Q5H80_14335) - 3212034..3213002 (+) 969 WP_304566020.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55607.71 Da        Isoelectric Point: 7.4323

>NTDB_id=861320 Q5H80_RS14320 WP_304566016.1 3208094..3209617(-) (comM) [Vibrio sp. SNU_ST1]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILLASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEHHHVDVSDNRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVKQARELMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=861320 Q5H80_RS14320 WP_304566016.1 3208094..3209617(-) (comM) [Vibrio sp. SNU_ST1]
ATGGGACTCGCGATAATTCATAGCCGAGCTAGTGTGGGTGTAGAGGCGCCAGAAGTAACCGTGGAAGTGCATATAAGCAA
CGGAATGCCCGGTTTTACGCTGGTGGGTCTACCTGAAACGACGGTCAAGGAATCTAAAGATCGAGTAAGGAGTGCGATCA
TCAATTCTCGCTTTGAATTTCCATCGAAAAGAATCACGGTCAACCTTGCACCTGCAGATTTACCCAAAGAGGGAGGACGT
TTCGATCTGCCAATCGCGCTTGGGATTTTGTTGGCGTCAGATCAGCTTCCTACATCAAAAATAGCTCAACATGAATTTAT
CGGTGAGTTGGCATTGTCAGGAGAATTACGCTCGGTAAAGGGCGTTCTGCCTGCGACGTTAGCCGCCGATAGCGTTGAAC
GATGCTTAGTGGTTCCGCACCATAATGGTGATCAGGCTGCGCTGGTTGGCAAGGGGGCGCATAAATCTGCTCAAACCTTG
TTGGAGGTTTGCGCTGACATGTGTGGACAGGCTCAGCTTGGTTTATATCGAACCGAGCATCATCATGTCGATGTATCTGA
TAATCGTGACTTACAAGATATTATTGGCCAGCAGCAAGGTAAGCGAGCACTGGAGATCGCCGCAGCCGGCAATCATAACT
TATTATTCCTTGGCCCGCCCGGAACTGGCAAGACTATGTTGGCGTCTCGATTGCGCGATTTGTTGCCCGAAATGAGTGAC
GACGAGGCGATGGAAACCGCTTCGGTGGCTTCTTTAACGCAACAAGAGATAAATCAATACAACTGGAAACAAAGGCCTTT
TCGATCTCCTCATCATTCCAGTTCGATGGCAGCATTGGTCGGTGGTGGCTCGATACCTCGCCCCGGAGAGATATCTTTAG
CGCATAATGGATTATTGTTTCTCGATGAGATGCCAGAATTTGAGCGTAAGGTACTTGATTCATTACGAGAGCCACTAGAG
TCGGGTGAAATCATTATCTCACGTGTCGCGGGTAAGACGCGTTTCCCTGCGCGCTTTCAATTGGTGGGCGCGTTGAACCC
TAGCCCAACAGGTTATTACGAAGGCAATCAAGCGCGAGCTAACCCGCAGATTATCCTTCGTTACCTCAATCGCTTATCTG
GGCCATTACTGGATAGGTTCGATATGTCATTAGAGATCCCTCTGTTGCCTAAAGGGATGTTGGCCGAAGGTGGTGACCGT
GGTGAAACCACTCAAGTCGTGAAGCAACGGGTTAAGCAGGCTCGCGAGTTGATGTTATCTCGAAACCATAAATCGAATGC
ACTGTTAGGTAGCCGAGAAATTGAAAAGTACTGCCCACTGAGGCGTGAGGATGCAGAATTTCTGGAAACGGCGCTGCATC
GATTAGGTTTATCAATTCGTGCCTATCATCGAATCATCAAGGTAGCGCGAACCATTGCAGACCTAGACGGTAACGAACAG
ATTGAAAAGAAGCATTTATCGGAAGCGCTTGGCTACCGAGCAATGGATCGATTGTTGAAGCAACTTACGGCTCAAGCTGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.826

100

0.838
  comM Vibrio campbellii strain DS40M4

83.235

100

0.832
  comM Haemophilus influenzae Rd KW20

65.483

100

0.655
  comM Glaesserella parasuis strain SC1401

63.086

100

0.637
  comM Legionella pneumophila str. Paris

48.79

97.83

0.477
  comM Legionella pneumophila strain ERS1305867

48.79

97.83

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.49

99.803

0.424