Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q5H80_RS01465 Genome accession   NZ_CP130748
Coordinates   312795..313349 (+) Length   184 a.a.
NCBI ID   WP_304567791.1    Uniprot ID   -
Organism   Vibrio sp. SNU_ST1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 307795..318349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5H80_RS01450 (Q5H80_01450) uvrA 307861..310692 (-) 2832 WP_304567786.1 excinuclease ABC subunit UvrA -
  Q5H80_RS01455 (Q5H80_01455) galU 310842..311714 (-) 873 WP_304567788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  Q5H80_RS01460 (Q5H80_01460) qstR 311869..312516 (-) 648 WP_304567790.1 LuxR C-terminal-related transcriptional regulator Regulator
  Q5H80_RS01465 (Q5H80_01465) ssb 312795..313349 (+) 555 WP_304567791.1 single-stranded DNA-binding protein Machinery gene
  Q5H80_RS01470 (Q5H80_01470) csrD 313511..315526 (+) 2016 WP_304567793.1 RNase E specificity factor CsrD -
  Q5H80_RS01475 (Q5H80_01475) - 315529..316971 (+) 1443 WP_304567795.1 MSHA biogenesis protein MshI -
  Q5H80_RS01480 (Q5H80_01480) pilO 316971..317618 (+) 648 WP_304567797.1 type 4a pilus biogenesis protein PilO -
  Q5H80_RS01485 (Q5H80_01485) - 317611..317943 (+) 333 WP_009847864.1 hypothetical protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20359.47 Da        Isoelectric Point: 5.2358

>NTDB_id=861284 Q5H80_RS01465 WP_304567791.1 312795..313349(+) (ssb) [Vibrio sp. SNU_ST1]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGSWGQPQQPQQQQQPQQQYSAPAQQQ
PKAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=861284 Q5H80_RS01465 WP_304567791.1 312795..313349(+) (ssb) [Vibrio sp. SNU_ST1]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGTTGGCGGAAGTTGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACGCGTAAATGGCAAGATCAAAGCGGTCAAGACCGTTACACAACAGAAGTTGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGCGGTGCTCCTGCCCAAGGTGGTATGGGTAACAACCAACAGC
AAGGTAGTTGGGGGCAGCCACAGCAGCCACAACAACAGCAGCAGCCACAACAACAATACAGTGCGCCAGCTCAACAGCAG
CCGAAAGCACCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCGATGGATTTTGATGATGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

82.258

100

0.832
  ssb Glaesserella parasuis strain SC1401

56.316

100

0.582
  ssb Neisseria meningitidis MC58

46.409

98.37

0.457
  ssb Neisseria gonorrhoeae MS11

46.409

98.37

0.457