Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   Q5H80_RS01460 Genome accession   NZ_CP130748
Coordinates   311869..312516 (-) Length   215 a.a.
NCBI ID   WP_304567790.1    Uniprot ID   -
Organism   Vibrio sp. SNU_ST1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 306869..317516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5H80_RS01450 (Q5H80_01450) uvrA 307861..310692 (-) 2832 WP_304567786.1 excinuclease ABC subunit UvrA -
  Q5H80_RS01455 (Q5H80_01455) galU 310842..311714 (-) 873 WP_304567788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  Q5H80_RS01460 (Q5H80_01460) qstR 311869..312516 (-) 648 WP_304567790.1 LuxR C-terminal-related transcriptional regulator Regulator
  Q5H80_RS01465 (Q5H80_01465) ssb 312795..313349 (+) 555 WP_304567791.1 single-stranded DNA-binding protein Machinery gene
  Q5H80_RS01470 (Q5H80_01470) csrD 313511..315526 (+) 2016 WP_304567793.1 RNase E specificity factor CsrD -
  Q5H80_RS01475 (Q5H80_01475) - 315529..316971 (+) 1443 WP_304567795.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25011.14 Da        Isoelectric Point: 9.4542

>NTDB_id=861283 Q5H80_RS01460 WP_304567790.1 311869..312516(-) (qstR) [Vibrio sp. SNU_ST1]
MKKSRYARTLHFLCIDPSDTYLHVKEIEKHLSIILYKMTPGELMLVDRKQSNRILLVDYKEVTQLLAICPNLPVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYNTDQKDKIARGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=861283 Q5H80_RS01460 WP_304567790.1 311869..312516(-) (qstR) [Vibrio sp. SNU_ST1]
ATGAAAAAATCTCGATACGCTCGCACTTTGCACTTTCTGTGCATCGACCCGAGTGACACCTACCTACACGTCAAAGAAAT
AGAAAAACATTTATCCATTATTCTCTACAAAATGACGCCCGGTGAATTGATGCTGGTTGATAGGAAGCAGAGTAATCGTA
TCCTGCTTGTTGATTACAAAGAGGTTACACAGCTACTGGCTATCTGTCCTAACCTACCCGTGATGTGGAAGAATCATGAG
ATAATCTTATTCAATGTTCCTCAACAACTTCCTACCTCTGAGCTGCTAACCTACGGGGTATTAAAAGGACTCTTTTACAA
CACAGATCAAAAGGACAAGATTGCTCGTGGTCTTCAAGAAGTGATCGATGGTGATAATTGGTTACCAAGAAAGGTGACTA
ATCAGCTGCTGTTTTATTATCGTAATATGGTCAATACCAATACGACCCCAACCAATGTTGATTTAACTATTCGTGAAATC
CAAGTAATTCGCTGCCTTCAATCAGGATCATCAAATACTCAAATAGCCGATGACCTTTTCATTAGCGAATTCACGGTCAA
ATCCCACCTCTATCAAATATTCCGTAAGTTAGCGGTGAAAAATAGAGTCCAAGCTATTGCGTGGGCAAACCAAAACTTGC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

54.884

100

0.549
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.526
  qstR Vibrio cholerae strain A1552

48.131

99.535

0.479