Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | K6J79_RS08090 | Genome accession | NZ_AP024555 |
| Coordinates | 1724301..1724612 (+) | Length | 103 a.a. |
| NCBI ID | WP_001166105.1 | Uniprot ID | Q9KQT1 |
| Organism | Vibrio cholerae strain IDH-03506 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1719301..1729612
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J79_RS08075 | lon | 1719338..1721698 (+) | 2361 | WP_001047611.1 | endopeptidase La | - |
| K6J79_RS08080 | - | 1721882..1722154 (+) | 273 | WP_001044516.1 | HU family DNA-binding protein | - |
| K6J79_RS08085 | ppiD | 1722307..1724166 (+) | 1860 | WP_000969331.1 | peptidylprolyl isomerase | - |
| K6J79_RS08090 | comEA | 1724301..1724612 (+) | 312 | WP_001166105.1 | ComEA family DNA-binding protein | Machinery gene |
| K6J79_RS08095 | cmk | 1724795..1725472 (+) | 678 | WP_000094752.1 | (d)CMP kinase | - |
| K6J79_RS08100 | rpsA | 1725581..1727251 (+) | 1671 | WP_000140318.1 | 30S ribosomal protein S1 | - |
| K6J79_RS08105 | ihfB | 1727539..1727817 (+) | 279 | WP_000167341.1 | integration host factor subunit beta | - |
| K6J79_RS08110 | - | 1727956..1728237 (+) | 282 | WP_000691492.1 | LapA family protein | - |
| K6J79_RS08115 | lapB | 1728249..1729418 (+) | 1170 | WP_000889971.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 10966.78 Da Isoelectric Point: 5.0506
>NTDB_id=85943 K6J79_RS08090 WP_001166105.1 1724301..1724612(+) (comEA) [Vibrio cholerae strain IDH-03506]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
Nucleotide
Download Length: 312 bp
>NTDB_id=85943 K6J79_RS08090 WP_001166105.1 1724301..1724612(+) (comEA) [Vibrio cholerae strain IDH-03506]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| comEA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.766 |
91.262 |
0.573 |
| comEA | Vibrio campbellii strain DS40M4 |
58.333 |
93.204 |
0.544 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.541 |
100 |
0.437 |