Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   K6J80_RS04920 Genome accession   NZ_AP024553
Coordinates   1046177..1046488 (+) Length   103 a.a.
NCBI ID   WP_001166105.1    Uniprot ID   Q9KQT1
Organism   Vibrio cholerae strain IDH-03329     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1041177..1051488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J80_RS04905 lon 1041214..1043574 (+) 2361 WP_001047611.1 endopeptidase La -
  K6J80_RS04910 - 1043758..1044030 (+) 273 WP_001044516.1 HU family DNA-binding protein -
  K6J80_RS04915 ppiD 1044183..1046042 (+) 1860 WP_000969331.1 peptidylprolyl isomerase -
  K6J80_RS04920 comEA 1046177..1046488 (+) 312 WP_001166105.1 ComEA family DNA-binding protein Machinery gene
  K6J80_RS04925 cmk 1046671..1047348 (+) 678 WP_000094752.1 (d)CMP kinase -
  K6J80_RS04930 rpsA 1047457..1049130 (+) 1674 WP_221275888.1 30S ribosomal protein S1 -
  K6J80_RS04935 ihfB 1049418..1049696 (+) 279 WP_000167341.1 integration host factor subunit beta -
  K6J80_RS04940 - 1049835..1050116 (+) 282 WP_000691492.1 LapA family protein -
  K6J80_RS04945 lapB 1050128..1051297 (+) 1170 WP_000889971.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10966.78 Da        Isoelectric Point: 5.0506

>NTDB_id=85883 K6J80_RS04920 WP_001166105.1 1046177..1046488(+) (comEA) [Vibrio cholerae strain IDH-03329]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=85883 K6J80_RS04920 WP_001166105.1 1046177..1046488(+) (comEA) [Vibrio cholerae strain IDH-03329]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KQT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

100

100

1
  comEA Vibrio cholerae strain A1552

100

100

1
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437

Multiple sequence alignment