Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LYSHEL_RS07040 Genome accession   NZ_AP024546
Coordinates   1448267..1449769 (-) Length   500 a.a.
NCBI ID   WP_213437084.1    Uniprot ID   -
Organism   Lysobacter helvus strain JCM32364     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1443267..1454769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYSHEL_RS07025 (LYSHEL_13860) - 1444400..1446805 (+) 2406 WP_213437080.1 ribonucleoside-diphosphate reductase subunit alpha -
  LYSHEL_RS07030 (LYSHEL_13870) - 1446850..1447809 (+) 960 WP_213437667.1 ribonucleotide-diphosphate reductase subunit beta -
  LYSHEL_RS07035 (LYSHEL_13880) - 1447814..1448200 (-) 387 WP_213437082.1 nuclear transport factor 2 family protein -
  LYSHEL_RS07040 (LYSHEL_13890) comM 1448267..1449769 (-) 1503 WP_213437084.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LYSHEL_RS07045 (LYSHEL_13900) - 1449784..1450050 (-) 267 WP_213437669.1 accessory factor UbiK family protein -
  LYSHEL_RS07050 (LYSHEL_13910) - 1450210..1450548 (+) 339 WP_213437086.1 P-II family nitrogen regulator -
  LYSHEL_RS07055 (LYSHEL_13920) speE 1450553..1451401 (-) 849 WP_213437088.1 polyamine aminopropyltransferase -
  LYSHEL_RS07060 (LYSHEL_13930) speA 1451521..1453407 (+) 1887 WP_213437090.1 arginine decarboxylase -
  LYSHEL_RS07065 (LYSHEL_13940) - 1453494..1454252 (-) 759 WP_213437092.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53280.15 Da        Isoelectric Point: 7.8852

>NTDB_id=85856 LYSHEL_RS07040 WP_213437084.1 1448267..1449769(-) (comM) [Lysobacter helvus strain JCM32364]
MGLSLVHSRARAGVRAPDVQVETHLGSGLPALHIVGLPGTAVREARDRVRAAIQCAQLEFPNGRITINLAPADLPKGGGR
FDLPIALGILAASGQVPQQAMRDVEFIGELGLTGELRPVDGVLPAVMAATAAKRRLIVPAENGAEAALVRDADVRTARTL
LEVCAALSGTKTLPVPEVREVEDVRVADLSDVRGQAHARRALEVAAAGGHHLLFVGPPGCGKTLLASRLPGLLPEATEAE
ALEAAAVASVSGRGIDASTWRTRPFRAPHHSASAIALVGGGTEPRPGEISLAHHGVLFLDELPEWDRHALQMLREPLESG
VATIARAARHCTFPARFQLVAAMNPCPCGWAGDPSGRCRCSPEMLQRYTARVSGPLMDRIDLHVEVPRLPPSALRDDAAP
GESSAVVRTRVIAARDRQLERIGCHNARLDVPQTQATCRLAPDDRRLLEHAIEMLQLSARSMHRILRVARTIADLEGSES
IATAHLTEAIGYRRLDRGTG

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=85856 LYSHEL_RS07040 WP_213437084.1 1448267..1449769(-) (comM) [Lysobacter helvus strain JCM32364]
ATGGGTCTGTCGCTCGTGCACAGCCGTGCACGCGCCGGCGTGCGCGCGCCCGACGTGCAGGTGGAAACGCACCTCGGGTC
CGGATTGCCGGCGCTGCACATCGTGGGATTGCCGGGCACGGCCGTGCGCGAGGCGCGCGATCGCGTGCGTGCCGCCATCC
AGTGCGCGCAACTCGAATTCCCCAACGGCCGCATCACCATCAACCTCGCGCCGGCGGACTTGCCGAAGGGCGGCGGGCGG
TTTGACCTGCCCATCGCGCTCGGGATCCTGGCGGCGAGCGGCCAGGTGCCGCAGCAGGCGATGCGCGATGTGGAGTTCAT
CGGCGAGCTCGGGCTGACGGGGGAACTGCGCCCCGTCGATGGCGTGCTGCCCGCGGTGATGGCCGCGACGGCGGCGAAGC
GACGGTTGATCGTGCCGGCGGAGAACGGCGCGGAGGCGGCGCTGGTGCGCGATGCGGATGTACGCACGGCGCGCACGTTG
CTCGAAGTGTGTGCGGCGTTGTCGGGGACGAAGACGTTGCCCGTGCCGGAGGTGCGCGAGGTCGAAGACGTGCGAGTCGC
CGACCTGAGTGACGTGCGGGGACAGGCGCATGCGCGGCGTGCGTTGGAAGTCGCGGCGGCCGGTGGGCATCACCTGTTGT
TCGTCGGACCGCCAGGGTGCGGCAAGACGTTGCTTGCCTCGCGCTTGCCCGGCCTGCTGCCGGAAGCGACGGAAGCCGAA
GCACTCGAAGCCGCGGCGGTCGCCTCGGTCAGCGGCCGCGGCATCGATGCATCGACGTGGCGCACACGCCCCTTCCGCGC
CCCGCACCACAGCGCGAGCGCGATCGCCCTCGTCGGCGGCGGCACCGAACCACGTCCCGGCGAAATCTCCCTCGCCCACC
ACGGCGTGCTGTTCCTCGACGAACTGCCCGAATGGGATCGCCACGCCTTGCAGATGCTGCGCGAACCGCTGGAATCCGGC
GTCGCCACGATCGCCCGCGCCGCGCGCCATTGCACGTTTCCCGCGCGCTTCCAGCTCGTCGCCGCGATGAATCCGTGTCC
GTGCGGCTGGGCCGGCGATCCGTCGGGCCGCTGTCGTTGTTCGCCCGAGATGCTGCAGCGCTACACCGCGCGCGTGTCGG
GGCCGTTGATGGATCGCATCGACCTGCACGTCGAAGTCCCGCGCCTGCCGCCGAGCGCATTGCGCGACGATGCCGCGCCC
GGCGAATCCAGCGCCGTCGTGCGCACGCGCGTCATCGCCGCACGCGATCGCCAACTCGAACGCATCGGGTGCCACAACGC
GCGGCTCGATGTGCCGCAGACCCAAGCCACGTGTCGTCTCGCCCCCGACGATCGCCGCCTGCTCGAACACGCCATCGAAA
TGCTGCAACTCTCCGCGCGTTCGATGCATCGCATCCTGCGCGTCGCGCGCACCATCGCCGACCTGGAAGGCAGCGAATCC
ATCGCCACCGCGCATCTCACCGAAGCCATCGGCTACCGCCGCCTGGATCGCGGAACCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.89

100

0.55
  comM Haemophilus influenzae Rd KW20

53.175

100

0.536
  comM Vibrio campbellii strain DS40M4

53.707

99.8

0.536
  comM Glaesserella parasuis strain SC1401

51.786

100

0.522
  comM Legionella pneumophila str. Paris

47.791

99.6

0.476
  comM Legionella pneumophila strain ERS1305867

47.791

99.6

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.238

100

0.456

Multiple sequence alignment