Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   QYC30_RS03305 Genome accession   NZ_CP130347
Coordinates   702884..703246 (-) Length   120 a.a.
NCBI ID   WP_206200447.1    Uniprot ID   -
Organism   Thermosynechococcus sp. JY1339     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 697884..708246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC30_RS03280 (QYC30_03280) - 698248..699003 (+) 756 WP_302677353.1 MBL fold metallo-hydrolase -
  QYC30_RS03285 (QYC30_03285) - 699006..699497 (+) 492 WP_302677354.1 phosphate-starvation-inducible PsiE family protein -
  QYC30_RS03290 (QYC30_03290) - 699474..700334 (-) 861 WP_315862978.1 prephenate/arogenate dehydrogenase -
  QYC30_RS03295 (QYC30_03295) - 700490..701617 (+) 1128 WP_149821393.1 HhoA/HhoB/HtrA family serine endopeptidase -
  QYC30_RS03300 (QYC30_03300) - 701619..702881 (+) 1263 WP_302677356.1 phospholipid carrier-dependent glycosyltransferase -
  QYC30_RS03305 (QYC30_03305) pilH 702884..703246 (-) 363 WP_206200447.1 response regulator transcription factor Machinery gene
  QYC30_RS03310 (QYC30_03310) - 703363..704238 (-) 876 WP_302677357.1 energy-coupling factor ABC transporter ATP-binding protein -
  QYC30_RS03315 (QYC30_03315) cbiQ 704225..705013 (-) 789 WP_302677358.1 cobalt ECF transporter T component CbiQ -
  QYC30_RS03320 (QYC30_03320) - 705021..705326 (-) 306 WP_206200444.1 energy-coupling factor ABC transporter substrate-binding protein -
  QYC30_RS03325 (QYC30_03325) - 705319..706095 (-) 777 WP_225901591.1 energy-coupling factor ABC transporter permease -
  QYC30_RS03330 (QYC30_03330) - 706333..706638 (+) 306 WP_149821405.1 cell division protein SepF -
  QYC30_RS03335 (QYC30_03335) - 706646..707032 (+) 387 WP_302677359.1 hypothetical protein -
  QYC30_RS03340 (QYC30_03340) recF 706971..708110 (-) 1140 WP_302677360.1 DNA replication/repair protein RecF -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13446.70 Da        Isoelectric Point: 4.3603

>NTDB_id=858097 QYC30_RS03305 WP_206200447.1 702884..703246(-) (pilH) [Thermosynechococcus sp. JY1339]
MATIMVVDDSPTLRAMIVQLMKEQNYDVVEAEDGIEAQEKIKAQCPDLVILDVVMPRMNGYELCRWIKGEAACQSVPVIM
CTTKSEEFDIHWGKKQGVDAYITKPFDPAELIATVKQLLG

Nucleotide


Download         Length: 363 bp        

>NTDB_id=858097 QYC30_RS03305 WP_206200447.1 702884..703246(-) (pilH) [Thermosynechococcus sp. JY1339]
ATGGCCACAATTATGGTTGTTGATGACAGCCCCACCCTGCGGGCAATGATTGTTCAGCTGATGAAAGAGCAGAACTATGA
CGTTGTTGAGGCTGAGGATGGTATCGAAGCCCAAGAAAAGATCAAGGCTCAATGTCCTGATTTGGTGATTCTGGATGTGG
TGATGCCGCGCATGAATGGTTACGAACTGTGCCGCTGGATTAAGGGTGAAGCGGCTTGCCAAAGTGTGCCCGTGATCATG
TGCACCACCAAAAGCGAAGAGTTTGATATTCACTGGGGTAAAAAGCAGGGGGTGGATGCCTACATCACCAAACCCTTTGA
TCCTGCAGAACTCATTGCCACTGTTAAACAACTCCTAGGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

54.622

99.167

0.542
  micA Streptococcus pneumoniae Cp1015

40.336

99.167

0.4
  pilG Acinetobacter baumannii strain A118

40.351

95

0.383
  chpA Acinetobacter baumannii strain A118

39.655

96.667

0.383
  vicR Streptococcus mutans UA159

37.815

99.167

0.375