Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WAZ51_RS15190 Genome accession   NZ_CP147050
Coordinates   3078320..3078949 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 1008S19     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3073320..3083949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAZ51_RS15175 (WAZ51_15175) helD 3073562..3075616 (-) 2055 WP_001295354.1 DNA helicase IV -
  WAZ51_RS15180 (WAZ51_15180) yccF 3075739..3076185 (+) 447 WP_265195202.1 YccF domain-containing protein -
  WAZ51_RS15185 (WAZ51_15185) yccS 3076195..3078357 (+) 2163 WP_000875061.1 YccS family putative transporter -
  WAZ51_RS15190 (WAZ51_15190) sxy/tfoX 3078320..3078949 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WAZ51_RS15195 (WAZ51_15195) sulA 3079168..3079677 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WAZ51_RS15200 (WAZ51_15200) ompA 3080034..3081074 (+) 1041 WP_000750416.1 porin OmpA -
  WAZ51_RS15205 (WAZ51_15205) matP 3081150..3081602 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WAZ51_RS15210 (WAZ51_15210) ycbZ 3081788..3083548 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=858091 WAZ51_RS15190 WP_000839153.1 3078320..3078949(-) (sxy/tfoX) [Escherichia coli strain 1008S19]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=858091 WAZ51_RS15190 WP_000839153.1 3078320..3078949(-) (sxy/tfoX) [Escherichia coli strain 1008S19]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1