Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   QYC28_RS12700 Genome accession   NZ_CP130346
Coordinates   2585916..2586278 (-) Length   120 a.a.
NCBI ID   WP_149821397.1    Uniprot ID   -
Organism   Thermosynechococcus sp. HY596     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2580916..2591278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC28_RS12675 (QYC28_12675) - 2581278..2582033 (+) 756 WP_302679588.1 MBL fold metallo-hydrolase -
  QYC28_RS12680 (QYC28_12680) - 2582036..2582527 (+) 492 WP_286625967.1 phosphate-starvation-inducible PsiE family protein -
  QYC28_RS12685 (QYC28_12685) - 2582504..2583364 (-) 861 WP_315863230.1 prephenate/arogenate dehydrogenase -
  QYC28_RS12690 (QYC28_12690) - 2583495..2584649 (+) 1155 WP_286668778.1 HhoA/HhoB/HtrA family serine endopeptidase -
  QYC28_RS12695 (QYC28_12695) - 2584651..2585913 (+) 1263 WP_302679590.1 phospholipid carrier-dependent glycosyltransferase -
  QYC28_RS12700 (QYC28_12700) pilH 2585916..2586278 (-) 363 WP_149821397.1 response regulator transcription factor Machinery gene
  QYC28_RS12705 (QYC28_12705) - 2586366..2587226 (-) 861 WP_149821399.1 energy-coupling factor ABC transporter ATP-binding protein -
  QYC28_RS12710 (QYC28_12710) cbiQ 2587228..2588016 (-) 789 WP_149821401.1 cobalt ECF transporter T component CbiQ -
  QYC28_RS12715 (QYC28_12715) - 2588024..2588329 (-) 306 WP_149821403.1 energy-coupling factor ABC transporter substrate-binding protein -
  QYC28_RS12720 (QYC28_12720) - 2588322..2589098 (-) 777 WP_302679591.1 energy-coupling factor ABC transporter permease -
  QYC28_RS12725 (QYC28_12725) - 2589336..2589641 (+) 306 WP_149821405.1 cell division protein SepF -
  QYC28_RS12730 (QYC28_12730) - 2589649..2590035 (+) 387 WP_302679592.1 hypothetical protein -
  QYC28_RS12735 (QYC28_12735) recF 2589974..2591113 (-) 1140 WP_302679593.1 DNA replication/repair protein RecF -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13460.72 Da        Isoelectric Point: 4.3603

>NTDB_id=858091 QYC28_RS12700 WP_149821397.1 2585916..2586278(-) (pilH) [Thermosynechococcus sp. HY596]
MATIMIVDDSPTLRAMIVQLMKEQNYDVVEAEDGIEAQEKIKAQCPDLVILDVVMPRMNGYELCRWIKGEAACQSVPVIM
CTTKSEEFDIHWGKKQGVDAYITKPFDPAELIATVKQLLG

Nucleotide


Download         Length: 363 bp        

>NTDB_id=858091 QYC28_RS12700 WP_149821397.1 2585916..2586278(-) (pilH) [Thermosynechococcus sp. HY596]
ATGGCTACAATTATGATTGTTGATGACAGCCCCACCCTGCGGGCAATGATTGTTCAGCTGATGAAAGAGCAGAACTATGA
CGTTGTTGAGGCCGAGGATGGTATCGAAGCCCAAGAAAAGATCAAGGCTCAATGTCCTGATTTGGTGATTCTGGATGTGG
TGATGCCGCGCATGAATGGTTACGAACTGTGCCGCTGGATTAAGGGTGAAGCGGCTTGCCAAAGTGTGCCCGTGATCATG
TGCACCACCAAAAGCGAAGAGTTTGATATTCACTGGGGTAAAAAGCAGGGGGTGGATGCCTACATCACCAAACCCTTTGA
TCCTGCAGAACTCATTGCCACTGTTAAACAACTCCTAGGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

54.622

99.167

0.542
  micA Streptococcus pneumoniae Cp1015

41.176

99.167

0.408
  chpA Acinetobacter baumannii strain A118

40.517

96.667

0.392
  vicR Streptococcus mutans UA159

38.655

99.167

0.383
  pilG Acinetobacter baumannii strain A118

39.474

95

0.375