Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QWJ31_RS24205 Genome accession   NZ_CP130340
Coordinates   3274223..3275875 (+) Length   550 a.a.
NCBI ID   WP_053820995.1    Uniprot ID   -
Organism   Cupriavidus gilardii strain M5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3269223..3280875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWJ31_RS24185 (QWJ31_24185) amt 3270526..3272070 (-) 1545 WP_053820997.1 ammonium transporter -
  QWJ31_RS24190 (QWJ31_24190) - 3272125..3272463 (-) 339 WP_006159494.1 P-II family nitrogen regulator -
  QWJ31_RS24195 (QWJ31_24195) - 3272524..3273294 (-) 771 WP_053820996.1 TorF family putative porin -
  QWJ31_RS24200 (QWJ31_24200) - 3273675..3273929 (+) 255 Protein_2956 accessory factor UbiK family protein -
  QWJ31_RS24205 (QWJ31_24205) comM 3274223..3275875 (+) 1653 WP_053820995.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QWJ31_RS24210 (QWJ31_24210) - 3276279..3276938 (-) 660 WP_053820994.1 LysE family transporter -
  QWJ31_RS24215 (QWJ31_24215) - 3277080..3278453 (-) 1374 WP_053820993.1 MFS transporter -
  QWJ31_RS24220 (QWJ31_24220) - 3278453..3279037 (-) 585 WP_053820992.1 hypothetical protein -
  QWJ31_RS24225 (QWJ31_24225) - 3279252..3279728 (+) 477 WP_053822959.1 thioredoxin fold domain-containing protein -
  QWJ31_RS24230 (QWJ31_24230) - 3279809..3280354 (+) 546 WP_053820991.1 TlpA disulfide reductase family protein -

Sequence

Protein


Download         Length: 550 a.a.        Molecular weight: 57061.22 Da        Isoelectric Point: 9.0759

>NTDB_id=858039 QWJ31_RS24205 WP_053820995.1 3274223..3275875(+) (comM) [Cupriavidus gilardii strain M5]
MHLAVLRSRALTGIDAPPVSVEIHLANGLPAFAIVGLAETEVRESRERVRAAILNCGFEFPNRRITVNLAPADLPKESGR
FDLAIALGILAASGQIPAPALDGYEFAAELSLSGMLRPVRGALAMAMGLAREQAAGAGAAAAAAAAAAAEAAAGAAAGAR
AGAAARAGTGTNASAGTAARAFVVAAGNGAEAALVESVTVLAAASLPEVCAHLARTGPPLARARPGATAPLAGSPAGMPD
MRDVRGQGQARRAMEVAAAGQHSALLIGPPGTGKSMLAQRFPGLLPPMTLQEALESAAVLSLTGAGFHTERWGRRPFRSP
HHTASAAAMVGGGGDPRPGEISLAHHGVLFLDELPEFERRVLEVLREPLESGRITISRAGRQADFPARFQFVAAMNPCPC
GYQGHPARACRCTPDQVLRYQSRLSGPLLDRIDLQIEVPAQSQQDTLDGPPGEDSAAIRARVLAARARQLERQGKPNGEL
AGQEIERHCPLDEQAQGLLRAAMARLGWSARSYFRVLKVARTIADLGGADFIGTAHAAEAVQYRRVLRPV

Nucleotide


Download         Length: 1653 bp        

>NTDB_id=858039 QWJ31_RS24205 WP_053820995.1 3274223..3275875(+) (comM) [Cupriavidus gilardii strain M5]
ATGCACCTCGCCGTCCTGCGCAGCCGCGCGCTGACCGGCATCGACGCGCCGCCGGTCTCGGTCGAAATCCATCTGGCCAA
TGGCCTGCCGGCCTTCGCCATCGTCGGTCTCGCGGAGACCGAGGTGCGCGAGAGCCGCGAGCGCGTGCGCGCGGCGATCC
TGAACTGCGGCTTCGAATTTCCGAACCGCCGCATCACGGTCAATCTGGCGCCCGCCGATCTGCCCAAGGAATCGGGCCGC
TTCGACCTGGCGATCGCGCTCGGCATCCTCGCGGCCAGCGGGCAGATCCCGGCGCCGGCGCTGGACGGCTACGAGTTCGC
CGCCGAGCTGTCGCTGTCGGGCATGCTGCGGCCGGTGCGCGGCGCGCTGGCGATGGCGATGGGACTGGCGCGCGAGCAGG
CGGCCGGAGCCGGAGCCGCAGCCGCAGCCGCAGCCGCAGCCGCAGCCGAAGCCGCAGCCGGAGCCGCAGCCGGAGCCAGA
GCCGGAGCAGCAGCAAGAGCTGGGACAGGGACCAATGCCAGCGCCGGCACCGCCGCTCGCGCCTTCGTGGTCGCGGCCGG
CAACGGCGCCGAGGCCGCGCTGGTCGAGTCGGTCACGGTGCTGGCGGCCGCCTCGCTGCCCGAGGTCTGCGCGCACCTGG
CCCGCACCGGCCCGCCGCTGGCGCGGGCCCGGCCCGGGGCGACGGCACCCTTGGCCGGTTCGCCCGCCGGCATGCCGGAC
ATGCGCGACGTCCGCGGCCAGGGGCAGGCGCGCCGCGCGATGGAGGTGGCGGCCGCCGGCCAGCACTCCGCCTTGCTGAT
CGGGCCGCCCGGCACCGGCAAGTCGATGCTGGCGCAGCGCTTTCCCGGGCTGCTGCCGCCGATGACGCTGCAGGAGGCGC
TCGAATCGGCCGCGGTGCTGAGCCTGACCGGCGCCGGCTTCCACACCGAGCGCTGGGGCCGCCGGCCGTTCCGCTCGCCC
CACCATACCGCCTCGGCGGCCGCGATGGTCGGCGGTGGCGGCGATCCGCGCCCCGGCGAGATTTCGCTGGCGCATCACGG
CGTGCTGTTCCTCGACGAGTTGCCCGAGTTCGAGCGGCGCGTGCTGGAGGTCCTGCGCGAGCCGCTGGAGTCGGGCCGCA
TCACGATCTCGCGTGCGGGCCGGCAGGCCGACTTCCCGGCACGCTTCCAGTTCGTCGCGGCGATGAACCCCTGCCCCTGC
GGCTACCAGGGCCATCCGGCCCGCGCCTGCCGCTGTACGCCCGACCAGGTGCTGCGCTACCAGTCGCGGCTGTCCGGGCC
GCTGCTGGACCGGATCGATCTGCAGATCGAAGTGCCGGCGCAAAGCCAGCAGGACACGCTGGATGGCCCGCCCGGCGAGG
ACAGCGCGGCGATCCGCGCGCGCGTGCTGGCCGCCCGGGCGCGGCAGCTCGAACGGCAGGGCAAACCCAATGGGGAACTG
GCGGGACAGGAGATCGAGCGGCATTGCCCGCTCGACGAGCAGGCGCAGGGGCTGCTGCGCGCCGCGATGGCACGGCTGGG
CTGGTCGGCGCGTTCGTACTTTCGCGTGCTGAAGGTCGCGCGGACCATTGCGGACCTGGGCGGCGCGGATTTCATCGGCA
CGGCGCACGCCGCGGAGGCGGTGCAGTATCGGCGGGTATTGCGCCCGGTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(240-444)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(452-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.909

99.455

0.496
  comM Vibrio campbellii strain DS40M4

48.545

100

0.485
  comM Haemophilus influenzae Rd KW20

47.101

100

0.473
  comM Glaesserella parasuis strain SC1401

46.266

99.818

0.462
  comM Legionella pneumophila str. Paris

46

100

0.46
  comM Legionella pneumophila strain ERS1305867

46

100

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.491

99.273

0.422