Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q3F88_RS05300 Genome accession   NZ_CP130333
Coordinates   1114836..1116356 (-) Length   506 a.a.
NCBI ID   WP_023295617.1    Uniprot ID   -
Organism   Enterobacter hormaechei subsp. xiangfangensis strain HD2292     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1109836..1121356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3F88_RS05290 (Q3F88_05290) hdfR 1113530..1114363 (-) 834 WP_195758490.1 HTH-type transcriptional regulator HdfR -
  Q3F88_RS05295 (Q3F88_05295) - 1114470..1114808 (+) 339 WP_006808641.1 DUF413 domain-containing protein -
  Q3F88_RS05300 (Q3F88_05300) comM 1114836..1116356 (-) 1521 WP_023295617.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q3F88_RS05305 (Q3F88_05305) ilvL 1116697..1116795 (+) 99 WP_001311244.1 ilv operon leader peptide -
  Q3F88_RS05310 (Q3F88_05310) ilvX 1116882..1116932 (+) 51 WP_166792073.1 peptide IlvX -
  Q3F88_RS05315 (Q3F88_05315) ilvG 1116935..1118581 (+) 1647 WP_023295616.1 acetolactate synthase 2 catalytic subunit -
  Q3F88_RS05320 (Q3F88_05320) ilvM 1118578..1118841 (+) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  Q3F88_RS05325 (Q3F88_05325) ilvE 1118860..1119789 (+) 930 WP_003860182.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54680.58 Da        Isoelectric Point: 7.5496

>NTDB_id=857953 Q3F88_RS05300 WP_023295617.1 1114836..1116356(-) (comM) [Enterobacter hormaechei subsp. xiangfangensis strain HD2292]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTPGLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENDEVAPASPEDLSDIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIFSLVSSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQTGIRG
ESSATVRERVIAAQARQYARQNRLNARLDNSGIRQFCSLNAEDAGWLEDTLTRFGLSIRAWQRLLKVARTVADVEGCSGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=857953 Q3F88_RS05300 WP_023295617.1 1114836..1116356(-) (comM) [Enterobacter hormaechei subsp. xiangfangensis strain HD2292]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCCATCGGCGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATTTAAGTAA
TGGACTGCCCGGACTGACGCTGGTCGGCTTACCAGAAACGACCGTTAAAGAGGCGAGGGATCGCGTGCGCAGCGCAATTA
TTAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATTAACCTTGCGCCCGCCGATTTGCCAAAGGAGGGAGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAATACGCCAGGGCTAAGCTCGTGTGAGTTCGT
GGGTGAATTAGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGAGCAATCTCGGGTGCGCTTGAAGCCATACGCGCGGGAA
GACAAATCATTGTGGCCAATGAAAATGCCTCTGAAGTAAGCCTTATCGCCGAAAAGGGGTGTCTTGTCGCAGGACATTTG
CAAGAGGTTTGCGCCTGGCTGGAAGGCCGACACGAGCTTGCCGAGCCGCAGGAGAATGACGAGGTGGCGCCAGCTTCGCC
CGAAGATCTCAGCGATATTATGGGTCAGGAACAGGGTAAGCGGGCGTTAGAGATAACGGCCGCGGGTGGGCATAACCTGT
TACTGATAGGTCCGCCAGGCACGGGGAAAACGATGCTGGCGAGCAGATTGAGCGGCCTGTTGCCACCCCTCAATAATCAT
GAAGCGCTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCTACGTCGCTGCATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCTCCACACCACAGTGCGTCTCTTACCGCGATGGTGGGCGGGGGTTCGATCCCCGGACCGGGTGAAATCTCACTGGCGC
ACAACGGCATTTTGTTTCTGGATGAATTGCCAGAGTTTGAACGCCGCGTGCTGGATGCATTGCGGGAGCCGATTGAATCC
GGCGAAATCCATTTGTCTCGTACACGGGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTAGTCGCGGCGATGAACCCTAG
CCCTACGGGTCATTATCAGGGCAATCATAACCGCTGTACGCCGGAGCAGACGCTGCGCTATCTGAGTAAGCTGTCTGGCC
CCTTTCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCCCCGCCCGGTCTGCTGAGGCAAACCGGTATTAGGGGC
GAAAGCTCAGCAACTGTGCGTGAACGGGTTATTGCGGCGCAGGCGCGGCAGTATGCTCGTCAGAACAGGCTGAATGCCCG
GCTGGATAACAGCGGGATCCGACAGTTTTGTTCTCTTAACGCTGAAGATGCAGGCTGGCTGGAAGATACACTGACGCGGT
TTGGGCTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTAGCGCGCACGGTCGCCGACGTGGAGGGCTGCTCCGGAATA
GAGAGGCGGCATTTGCAGGAGGCATTAAGTTACCGAGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.513

100

0.591
  comM Glaesserella parasuis strain SC1401

58.777

100

0.589
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Vibrio campbellii strain DS40M4

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

49.497

98.221

0.486
  comM Legionella pneumophila strain ERS1305867

49.497

98.221

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.333

100

0.437