NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	Q2E61_RS00820	Genome accession	NZ_CP130317
Coordinates	188004..189497 (-)	Length	497 a.a.
NCBI ID	WP_302736888.1	Uniprot ID	-
Organism	Microbulbifer thermotolerans strain HB226069
Function	ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	184029..194720	188004..189497	within	0

Gene organization within MGE regions

Location: 184029..194720

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q2E61_RS00800 (Q2E61_00800)	rep	184029..186062 (-)	2034	WP_302736885.1	DNA helicase Rep	-
Q2E61_RS00805 (Q2E61_00805)	-	186205..186444 (+)	240	WP_067150190.1	DUF3565 domain-containing protein	-
Q2E61_RS00810 (Q2E61_00810)	-	186441..186899 (+)	459	WP_067150192.1	YaiI/YqxD family protein	-
Q2E61_RS00815 (Q2E61_00815)	-	187224..187793 (+)	570	WP_067150195.1	GNAT family N-acetyltransferase	-
Q2E61_RS00820 (Q2E61_00820)	comM	188004..189497 (-)	1494	WP_302736888.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
Q2E61_RS00825 (Q2E61_00825)	-	189525..189776 (-)	252	WP_067150202.1	accessory factor UbiK family protein	-
Q2E61_RS00830 (Q2E61_00830)	-	190246..190959 (+)	714	WP_067150205.1	TorF family putative porin	-
Q2E61_RS00835 (Q2E61_00835)	-	191010..191348 (+)	339	WP_067150208.1	P-II family nitrogen regulator	-
Q2E61_RS00840 (Q2E61_00840)	-	191420..192679 (+)	1260	WP_067150211.1	ammonium transporter	-
Q2E61_RS00845 (Q2E61_00845)	-	192765..193103 (+)	339	WP_043319767.1	P-II family nitrogen regulator	-
Q2E61_RS00850 (Q2E61_00850)	-	193506..193730 (+)	225	WP_067150214.1	hypothetical protein	-
Q2E61_RS00855 (Q2E61_00855)	xerC	193833..194714 (-)	882	WP_067157228.1	tyrosine recombinase XerC	-

Sequence

Protein

Download Length: 497 a.a. Molecular weight: 53221.72 Da Isoelectric Point: 7.7021

                                >NTDB_id=857668 Q2E61_RS00820 WP_302736888.1 188004..189497(-) (comM) [Microbulbifer thermotolerans strain HB226069]

MSLSITYSRAQLGVSAPLVTVETHLANGLPSFHIVGLPEAAVRESRDRVRSALINSHFEFPQRRITVNLAPADLPKEGGR

YDLAIAVGILAASGQIPRDPLDNYEFIGELALTGALREVPGALPAAIACGAAGRRLVLPRESGGEAALAETDVKVAASLL

QVCAELHGREQLSEAQREAEDNAPACADLADVRGQLKARRALEVAAAGGHHLLFYGPPGTGKTMLASRLPGILPPPGGDE

LIEVAAVYSSAGLARPQQRPFRAPHHSASATALAGGGTQPKPGEISLAHRGVLFLDEMPEFPRHALEILREPLETGQVHI

ARARAQVTYPANFQLVAAMNPCPCGYLGEPRCRCTPDQIDRYRNKLSGPLLDRIDMQVEVAAMSASQLQDSPPGECSAAV

RKRVIAARERQLHRQGKINAQLNGSELDRFCALGQSEQALLRHSVERLGLSARSYHRVLRVARTLADLAGEAHIGAGQIA

EALAYRNLDRRQLTAEI

Nucleotide

Download Length: 1494 bp

                                >NTDB_id=857668 Q2E61_RS00820 WP_302736888.1 188004..189497(-) (comM) [Microbulbifer thermotolerans strain HB226069]

TTGAGCCTCTCGATCACCTACAGCCGCGCGCAACTGGGCGTCTCCGCACCACTGGTCACCGTCGAAACCCATTTGGCCAA

CGGCCTACCGTCCTTTCATATCGTAGGCCTGCCCGAGGCCGCGGTGCGCGAAAGCCGCGACCGGGTCCGCAGCGCACTGA

TCAACAGCCACTTCGAATTTCCCCAGCGGCGCATAACCGTCAACCTGGCCCCCGCGGACCTGCCCAAGGAAGGCGGCCGC

TACGACCTCGCCATCGCCGTGGGCATTCTCGCCGCATCCGGCCAAATCCCCCGCGATCCCCTGGATAACTATGAGTTCAT

CGGCGAACTGGCACTCACCGGGGCACTGCGGGAAGTCCCCGGCGCCCTGCCTGCAGCCATCGCTTGCGGTGCCGCCGGGC

GCCGGCTGGTATTGCCGCGGGAGTCCGGCGGCGAGGCGGCGCTGGCGGAAACAGATGTAAAGGTCGCCGCCTCCCTGCTA

CAGGTCTGTGCCGAATTGCACGGGCGCGAACAGCTCTCGGAAGCGCAGCGCGAGGCGGAAGACAATGCACCAGCCTGTGC

TGATCTCGCCGATGTGCGCGGCCAGCTCAAGGCGCGGCGCGCCCTGGAAGTGGCCGCGGCCGGCGGCCACCATTTGCTTT

TTTACGGTCCACCCGGCACCGGCAAAACCATGCTCGCCAGCCGCCTGCCGGGCATACTGCCGCCGCCCGGCGGTGACGAG

CTGATCGAAGTGGCCGCCGTCTACTCCAGCGCCGGTCTGGCGCGGCCGCAACAGCGCCCTTTCCGCGCGCCCCATCACAG

CGCCTCGGCAACCGCTCTGGCCGGGGGCGGCACTCAGCCGAAACCGGGGGAAATTTCCCTGGCCCATCGCGGGGTATTGT

TTCTGGACGAAATGCCGGAGTTCCCCCGCCACGCGCTGGAAATATTGCGCGAGCCGCTGGAAACCGGGCAGGTGCATATC

GCCCGCGCCCGTGCCCAGGTCACCTATCCCGCCAACTTTCAGCTGGTGGCCGCCATGAACCCCTGTCCCTGCGGCTACCT

GGGCGAGCCCCGCTGCCGCTGTACCCCGGACCAGATAGACCGCTACCGCAACAAGCTCTCCGGCCCTCTGCTCGACCGCA

TCGATATGCAGGTGGAAGTGGCGGCGATGTCGGCCAGTCAGCTGCAGGACAGTCCGCCCGGCGAATGCTCGGCGGCGGTG

CGCAAACGGGTGATTGCCGCCCGGGAGCGGCAGCTGCACAGACAGGGAAAAATCAACGCGCAGCTCAACGGGTCCGAGCT

GGACCGCTTCTGTGCACTGGGACAAAGCGAGCAAGCACTGCTGCGGCACTCGGTGGAAAGACTGGGGCTGTCCGCGCGCA

GTTACCACCGGGTATTAAGAGTCGCGCGCACCCTGGCAGATCTCGCTGGAGAGGCGCACATCGGCGCAGGCCAAATTGCC

GAAGCGCTGGCCTACCGAAATCTAGATCGGCGACAACTCACCGCAGAAATCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-387)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(395-486)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	55.446	100	0.563
comM	Vibrio campbellii strain DS40M4	54.257	100	0.551
comM	Haemophilus influenzae Rd KW20	53.493	100	0.539
comM	Glaesserella parasuis strain SC1401	53.493	100	0.539
comM	Legionella pneumophila str. Paris	49.499	100	0.497
comM	Legionella pneumophila strain ERS1305867	49.499	100	0.497
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	44.553	100	0.461

Detailed information NTG0857668