Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   STYK_RS00105 Genome accession   NZ_AP024523
Coordinates   20593..20829 (+) Length   78 a.a.
NCBI ID   WP_261805007.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 15593..25829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS00105 (STYK_00150) comW 20593..20829 (+) 237 WP_261805007.1 sigma(X)-activator ComW Regulator
  STYK_RS00110 (STYK_00160) - 21060..22346 (+) 1287 WP_001832534.1 adenylosuccinate synthase -
  STYK_RS00115 (STYK_00170) tadA 22546..23013 (+) 468 WP_001110112.1 tRNA adenosine(34) deaminase TadA -
  STYK_RS00125 (STYK_00180) - 23200..23643 (+) 444 WP_004257643.1 dUTP diphosphatase -
  STYK_RS00130 (STYK_00190) - 23603..24160 (+) 558 WP_000863561.1 histidine phosphatase family protein -
  STYK_RS00135 (STYK_00200) radA 24174..25535 (+) 1362 WP_078228442.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 10020.62 Da        Isoelectric Point: 7.3500

>NTDB_id=85705 STYK_RS00105 WP_261805007.1 20593..20829(+) (comW) [Streptococcus toyakuensis strain TP1632]
MLQKNYEQMMDFYRNIEEEYGMFFGDNFDWEHFHFKFLIYYLVRYRIVSHRDFIVYHYRVAYRLYLEKLIMKQGFVAC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=85705 STYK_RS00105 WP_261805007.1 20593..20829(+) (comW) [Streptococcus toyakuensis strain TP1632]
ATGTTACAAAAAAATTATGAGCAGATGATGGATTTTTATAGAAACATTGAAGAAGAGTATGGTATGTTCTTCGGTGATAA
TTTTGATTGGGAACATTTTCATTTTAAGTTTTTGATTTATTATCTTGTCCGATATCGTATTGTGAGTCATCGGGATTTTA
TTGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGATAATGAAACAAGGTTTTGTTGCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus mitis SK321

93.59

100

0.936
  comW Streptococcus mitis NCTC 12261

93.506

98.718

0.923
  comW Streptococcus pneumoniae Rx1

76.923

100

0.769
  comW Streptococcus pneumoniae D39

76.923

100

0.769
  comW Streptococcus pneumoniae R6

76.923

100

0.769
  comW Streptococcus pneumoniae TIGR4

76.923

100

0.769

Multiple sequence alignment