Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   STYK_RS00135 Genome accession   NZ_AP024523
Coordinates   24174..25535 (+) Length   453 a.a.
NCBI ID   WP_078228442.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 19174..30535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS00105 (STYK_00150) comW 20593..20829 (+) 237 WP_261805007.1 sigma(X)-activator ComW Regulator
  STYK_RS00110 (STYK_00160) - 21060..22346 (+) 1287 WP_001832534.1 adenylosuccinate synthase -
  STYK_RS00115 (STYK_00170) tadA 22546..23013 (+) 468 WP_001110112.1 tRNA adenosine(34) deaminase TadA -
  STYK_RS00125 (STYK_00180) - 23200..23643 (+) 444 WP_004257643.1 dUTP diphosphatase -
  STYK_RS00130 (STYK_00190) - 23603..24160 (+) 558 WP_000863561.1 histidine phosphatase family protein -
  STYK_RS00135 (STYK_00200) radA 24174..25535 (+) 1362 WP_078228442.1 DNA repair protein RadA Machinery gene
  STYK_RS00140 (STYK_00210) - 25608..26105 (+) 498 WP_004237611.1 beta-class carbonic anhydrase -
  STYK_RS00145 (STYK_00220) - 26130..26945 (+) 816 WP_261805008.1 PrsW family intramembrane metalloprotease -
  STYK_RS00150 (STYK_00230) - 27091..28059 (+) 969 WP_000010168.1 ribose-phosphate diphosphokinase -
  STYK_RS00155 (STYK_00240) - 28177..29142 (+) 966 WP_031237278.1 Rpn family recombination-promoting nuclease/putative transposase -
  STYK_RS00160 - 29135..29631 (+) 497 Protein_24 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49446.93 Da        Isoelectric Point: 6.5137

>NTDB_id=85706 STYK_RS00135 WP_078228442.1 24174..25535(+) (radA) [Streptococcus toyakuensis strain TP1632]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRTEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIQVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=85706 STYK_RS00135 WP_078228442.1 24174..25535(+) (radA) [Streptococcus toyakuensis strain TP1632]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCACCTAAATATCTGGGGCGTTGCCCCAACTG
TGGGTCTTGGTCTTCTTTTGTAGAAGAGGTTGAGGTTGCCGAGGTCAAGAATGCGCGTGTGTCCTTGACAGGTGAGAAAA
CCAAGCCCATGAAACTGGCTGAGGTGACTTCCATCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGTGTA
CTTGGAGGCGGAGTGGTACCGGGAAGTCTCGTCCTCATAGGTGGGGATCCTGGGATTGGGAAATCAACCCTTCTCCTACA
AGTCTCAACTCAGCTGTCTCAAGTTGGGACTGTTCTCTACGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAGCTACGAG
CAGAGCGCTTGGGTGATATTGATAGTGAGTTTTATCTTTATGCAGAGACCAATATGCAGAGTGTTCGAACTGAGGTGGAG
CGCATCCAGCCAGACTTCCTCATCATCGACTCCATTCAGACTATTATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGT
TTCTCAAGTGCGTGAGGTGACAGCGGAACTTATGCAGCTGGCCAAAACAAATAACATTGCCATCTTTATCGTAGGACATG
TGACCAAGGAGGGCACTCTAGCTGGTCCTCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAGCGT
CACCATACCTTTCGTATTTTGAGAGCGGTCAAAAACCGGTTTGGCTCCACTAATGAGATTGGGATTTTTGAGATGCAGTC
GGGTGGCTTGGTTGAAGTCCTCAATCCGAGTCAAGTTTTCCTAGAGGAGCGTTTGGATGGGGCGACTGGTTCGTCAATCG
TTGTGACTATGGAAGGGACGCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCGACCATGTTTGGAAATGCCAAG
CGTACGACGACAGGACTTGATTTTAATCGTGCGAGTTTGATTATGGCTGTTTTGGAAAAGCGTGCAGGTCTTCTCTTGCA
AAATCAGGATGCCTATCTCAAATCTGCTGGCGGTGTTAAATTGGATGAACCTGCGATAGACTTAGCTGTTGCGGTTGCTA
TTGCTTCGAGTTATAAAGACAAGCCAACTAATCCTCAGGAATGTTTTGTAGGAGAACTTGGTTTGACGGGAGAGATTCGG
CGCGTGAATCGTATCGAACAACGCATCAATGAAGCTGCTAAACTGGGATTTACTAAGATTTATGTACCTAAGAATTCTTT
GACAGGAATCACTCCGCCTAAGGAAATTCAGGTCATTGGAGTAACAACGATTCAGGAAGTTTTGAAAAAGGTCTTTGCAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

100

100

1
  radA Streptococcus mitis SK321

99.558

100

0.996
  radA Streptococcus pneumoniae Rx1

99.558

100

0.996
  radA Streptococcus pneumoniae D39

99.558

100

0.996
  radA Streptococcus pneumoniae R6

99.558

100

0.996
  radA Streptococcus pneumoniae TIGR4

99.558

100

0.996
  radA Bacillus subtilis subsp. subtilis str. 168

63.135

100

0.631

Multiple sequence alignment