Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QZN18_RS26615 Genome accession   NZ_CP129982
Coordinates   5454831..5456351 (+) Length   506 a.a.
NCBI ID   WP_012969207.1    Uniprot ID   A0A1F2LT85
Organism   Klebsiella variicola strain LY16     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5449831..5461351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZN18_RS26595 (QZN18_26595) - 5451388..5452317 (-) 930 WP_008807980.1 branched-chain amino acid transaminase -
  QZN18_RS26600 (QZN18_26600) ilvM 5452337..5452594 (-) 258 WP_008807981.1 acetolactate synthase 2 small subunit -
  QZN18_RS26605 (QZN18_26605) ilvG 5452591..5454237 (-) 1647 WP_302073858.1 acetolactate synthase 2 catalytic subunit -
  QZN18_RS28235 ilvX 5454240..5454293 (-) 54 WP_201281575.1 peptide IlvX -
  QZN18_RS26610 (QZN18_26610) ilvL 5454378..5454476 (-) 99 WP_001311244.1 ilv operon leader peptide -
  QZN18_RS26615 (QZN18_26615) comM 5454831..5456351 (+) 1521 WP_012969207.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QZN18_RS26620 (QZN18_26620) - 5456376..5456714 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  QZN18_RS26625 (QZN18_26625) hdfR 5456833..5457654 (+) 822 WP_064180844.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55099.54 Da        Isoelectric Point: 8.2651

>NTDB_id=856879 QZN18_RS26615 WP_012969207.1 5454831..5456351(+) (comM) [Klebsiella variicola strain LY16]
MSLAIVYTRAALGIEAPLITIEVHLSSGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QQVCAFLAGQASLSPPLADVPAVDERCEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLACRLPGLLPPLSNQ
EALESTAIQSLVNLQTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGTQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRQEDALWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=856879 QZN18_RS26615 WP_012969207.1 5454831..5456351(+) (comM) [Klebsiella variicola strain LY16]
ATGTCGCTCGCCATCGTTTACACACGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTATCGAGGTTCATCTCAGCAG
CGGTCTGCCTGGCTTGACCATGGTCGGGCTACCGGAGACCACCGTGAAAGAGGCCCGCGACCGGGTACGCAGCGCCTTGA
TCAACAGCGGCTACGCTTTCCCTGCGAAGAAAATAACCATTAACCTGGCACCCGCGGATCTGCCCAAAGAGGGCGGGCGA
TATGACCTTCCCATCGCTCTCGCGCTTCTCGTCGCCTCAGAGCAGCTCAACACTACCCGATTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTTACAGGCGGCTTACGCGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAAGCCATCAAAGCCGGCC
GGCGCATTGTCGTCTCCTCTGACAATGCGGCTGAGGTGGGTCTGATCGGCGGCAGCGATTGCCTGGTCGCCGACCATCTG
CAACAGGTGTGCGCGTTTCTCGCAGGGCAAGCATCGCTCTCGCCGCCTCTCGCCGACGTGCCCGCCGTTGATGAACGCTG
TGAAGATCTACGTGATGTTATCGGCCAACAACAAGGCAAGCGAGCGCTGGAGATTGTGGCGGCCGGTGGCCACAACCTGC
TGCTGATTGGCCCGCCCGGTACCGGCAAAACAATGCTTGCCTGCCGGCTCCCCGGCCTTTTGCCGCCATTAAGCAACCAG
GAAGCGCTGGAGAGCACGGCCATTCAAAGTCTGGTCAACCTCCAGACTGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCCCCTCACCATAGCGCCTCGCTGGCAGCGATGGTAGGCGGAGGCTCAATACCTGTCCCCGGCGAGATTTCACTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAACTGCCAGAGTTTGAACGACGGGTGCTGGACGCGCTGCGTGAACCCATTGAGTCA
GGCAAGATCCACATATCGCGATCGCGCGCCAAGATTGACTATCCGGCGCGTTTTCAGCTTATCGCGGCAATGAACCCAAG
CCCTACCGGGCATTATCAGGGCAAACATAATCGCGCGTCGCCTGAGCAGACATTGCGCTACCTTGGGCGCCTGTCCGGCC
CTTTTCTCGACCGCTTCGATCTTTCTTTAGAGATCCCGCTCCCGCCGCCGGGGATACTGAGCCAGGGCACGCAGGGCGAA
GAATCGAGTGCGACGGTCCGTCAGCGTGTGCTGGCGGCACGTGAACGCCAAATGCTCAGGCAAAATAAGCTGAATGCGCA
TCTTGAGAATCGTGAAATGAAGAGCTGCTGTCACTTGCGCCAGGAGGATGCGCTTTGGCTGGAACAGACGTTAACGCAGC
TGGGGCTTTCTATACGGGCCTGGCAGCGTCTGTTAAAGGTGGCAAGAACCATTGCCGATCTGGCAGAAGCTGAAGAGATT
GAACGCCGCCATTTGCAGGAGGCGCTCAGCTATCGGGCAATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LT85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.883

100

0.605
  comM Glaesserella parasuis strain SC1401

59.766

100

0.605
  comM Vibrio cholerae strain A1552

59.245

99.407

0.589
  comM Vibrio campbellii strain DS40M4

58.532

99.605

0.583
  comM Legionella pneumophila str. Paris

49.497

98.221

0.486
  comM Legionella pneumophila strain ERS1305867

49.497

98.221

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.862

100

0.449