Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q1Z72_RS28070 Genome accession   NZ_CP129981
Coordinates   6034810..6036300 (+) Length   496 a.a.
NCBI ID   WP_058541731.1    Uniprot ID   -
Organism   Pseudomonas qingdaonensis strain L1712hy     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6029810..6041300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q1Z72_RS28040 (Q1Z72_28040) - 6030156..6030851 (+) 696 WP_058541733.1 HAD family hydrolase -
  Q1Z72_RS28045 (Q1Z72_28045) sutA 6031012..6031335 (-) 324 WP_043863351.1 transcriptional regulator SutA -
  Q1Z72_RS28050 (Q1Z72_28050) - 6031801..6033126 (-) 1326 WP_043863350.1 ammonium transporter -
  Q1Z72_RS28055 (Q1Z72_28055) glnK 6033168..6033506 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  Q1Z72_RS28060 (Q1Z72_28060) - 6033848..6034111 (+) 264 WP_043863349.1 accessory factor UbiK family protein -
  Q1Z72_RS28065 (Q1Z72_28065) - 6034154..6034606 (-) 453 WP_058541732.1 GNAT family N-acetyltransferase -
  Q1Z72_RS28070 (Q1Z72_28070) comM 6034810..6036300 (+) 1491 WP_058541731.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q1Z72_RS28075 (Q1Z72_28075) - 6036401..6036559 (+) 159 WP_160328373.1 hypothetical protein -
  Q1Z72_RS28080 (Q1Z72_28080) - 6036707..6038098 (+) 1392 WP_302099265.1 PAAR domain-containing protein -
  Q1Z72_RS28085 (Q1Z72_28085) - 6038583..6040397 (-) 1815 WP_058541728.1 M48 family metalloprotease -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52951.89 Da        Isoelectric Point: 7.7168

>NTDB_id=856859 Q1Z72_RS28070 WP_058541731.1 6034810..6036300(+) (comM) [Pseudomonas qingdaonensis strain L1712hy]
MSLALVHSRAQVGVLAPAVTIEAHLANGLPNLTLVGLPEATVKESKDRVRSAILNSGLEFPARRITLNLAPADLPKDGGR
FDLAIALGILAANGQMPIASLHAVECLGELALSGAVRCVQGVLPAALAAREAGRALAVPRENAEEACLASGLVVYAVDHL
LELVAHLNGQQPLEPYKANGLVLHSQPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLNE
REALEVAAIQSVASPLPLNSWPQRPFRHPHHSASGAALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARAKDKIRFPARFQLVAAMNPCPCGYHGDPTGRCRCSSDQIQRYRNKLSGPLLDRIDLHLTVAREATALSHCTDN
GPASAHIAGQVAAARERQQQRQGCANAFLELPGLRQHCALSTDDQHWLETACERLTLSLRAAHRLLKVARTLADLEQAAH
IARVHLAEALQYRPGP

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=856859 Q1Z72_RS28070 WP_058541731.1 6034810..6036300(+) (comM) [Pseudomonas qingdaonensis strain L1712hy]
ATGTCCCTCGCCCTTGTCCACAGCCGCGCCCAGGTGGGCGTGCTGGCCCCTGCGGTCACCATCGAAGCGCACCTGGCCAA
CGGCCTGCCCAACCTGACCCTGGTCGGCCTGCCCGAAGCCACGGTGAAGGAAAGCAAGGACCGTGTGCGCAGCGCCATCC
TCAACTCCGGCCTGGAGTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGACGC
TTCGACCTGGCCATAGCCCTGGGCATCCTGGCCGCCAACGGGCAGATGCCGATCGCCTCGCTGCACGCGGTGGAGTGCCT
GGGCGAGTTGGCGCTGTCGGGGGCGGTGCGCTGCGTGCAGGGCGTGCTGCCTGCCGCCCTTGCCGCCCGCGAAGCCGGGC
GCGCCCTGGCGGTGCCACGGGAGAATGCCGAGGAGGCCTGCCTGGCTTCGGGCCTGGTGGTGTACGCCGTAGACCACCTG
CTGGAACTGGTCGCGCACCTCAACGGCCAGCAGCCCCTCGAACCCTACAAGGCCAACGGCCTGGTCCTGCACAGCCAGCC
CTACCCCGACCTCAACGAGGTGCAGGGCCAGCTTGCCGCCAAGCGTGCCCTGCTGATCGCAGCGGCCGGGGCCCACAACC
TGCTGTTCAGCGGGCCACCCGGCACCGGCAAGACCCTGCTCGCCAGCCGCCTGCCCGGCCTGCTGCCACCGCTGAACGAG
CGCGAAGCGCTGGAGGTGGCGGCCATCCAGTCGGTCGCCAGCCCGCTGCCGCTCAACAGCTGGCCGCAGCGTCCGTTTCG
CCACCCGCATCACTCGGCGTCGGGGGCCGCACTGGTCGGCGGTGGCAGCCGCCCGCAACCCGGCGAGATCACCCTGGCCC
ACCATGGCGTGCTGTTTCTGGATGAGTTGCCGGAGTTCGAGCGGCGCGTGCTGGAAGTGCTGCGCGAGCCCCTGGAATCG
GGCGAAATCGTGATCGCCCGGGCCAAGGACAAGATCCGCTTCCCGGCCCGCTTCCAACTGGTGGCAGCGATGAACCCCTG
CCCCTGCGGCTACCATGGCGACCCCACCGGTCGCTGCCGATGCAGCAGTGACCAGATCCAGCGCTACCGCAACAAGCTCT
CCGGCCCGTTGCTTGATCGCATCGACCTGCACCTGACCGTCGCCCGTGAAGCCACGGCGCTCTCGCACTGCACCGACAAC
GGCCCCGCCAGTGCCCACATCGCAGGGCAGGTGGCTGCCGCACGCGAACGACAACAACAGCGCCAGGGCTGTGCCAACGC
CTTTCTCGAGCTGCCCGGCCTGCGCCAGCACTGCGCGCTGTCCACTGACGATCAGCACTGGCTGGAAACCGCGTGCGAAC
GACTAACCTTGTCGCTACGGGCCGCGCACCGCCTGCTCAAGGTGGCGCGTACGCTGGCCGATCTGGAACAGGCCGCACAC
ATTGCGCGTGTGCACCTGGCCGAGGCCCTGCAGTACCGCCCCGGGCCTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.162

99.798

0.56
  comM Haemophilus influenzae Rd KW20

55.4

100

0.558
  comM Vibrio campbellii strain DS40M4

55.422

100

0.556
  comM Glaesserella parasuis strain SC1401

54.473

100

0.552
  comM Legionella pneumophila str. Paris

49.301

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.301

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.733

100

0.476