Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QZH53_RS01655 Genome accession   NZ_CP129954
Coordinates   322136..322666 (+) Length   176 a.a.
NCBI ID   WP_023310055.1    Uniprot ID   A0A7W2V7Q4
Organism   Enterobacter asburiae strain IK3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 312790..338129 322136..322666 within 0


Gene organization within MGE regions


Location: 312790..338129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZH53_RS01600 - 312790..313080 (-) 291 WP_059445311.1 hypothetical protein -
  QZH53_RS01605 - 313081..313488 (-) 408 WP_033144411.1 hypothetical protein -
  QZH53_RS01610 - 313554..314036 (-) 483 WP_080470222.1 ribonuclease domain-containing protein -
  QZH53_RS01615 - 314055..314504 (-) 450 WP_059445309.1 lysozyme -
  QZH53_RS01620 - 314504..315106 (-) 603 WP_059445308.1 DUF2589 domain-containing protein -
  QZH53_RS01625 - 315182..315739 (-) 558 WP_059445307.1 DUF2589 domain-containing protein -
  QZH53_RS01630 tyrB 315946..317139 (+) 1194 WP_045355258.1 aromatic amino acid transaminase -
  QZH53_RS01635 aphA 317460..318173 (+) 714 WP_059445306.1 acid phosphatase AphA -
  QZH53_RS01640 - 318287..318703 (+) 417 WP_023310052.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QZH53_RS01645 - 318706..319059 (+) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  QZH53_RS01650 uvrA 319063..321885 (-) 2823 WP_045355262.1 excinuclease ABC subunit UvrA -
  QZH53_RS01655 ssb 322136..322666 (+) 531 WP_023310055.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QZH53_RS01660 - 322824..324071 (+) 1248 WP_032142157.1 site-specific integrase -
  QZH53_RS01665 - 324061..325620 (+) 1560 WP_001514820.1 site-specific integrase -
  QZH53_RS01670 - 325613..327646 (+) 2034 WP_016236831.1 hypothetical protein -
  QZH53_RS01675 - 327639..328058 (+) 420 WP_032142156.1 hypothetical protein -
  QZH53_RS01680 - 328163..328753 (+) 591 WP_302110985.1 hypothetical protein -
  QZH53_RS01685 - 328761..331463 (+) 2703 WP_302110986.1 hypothetical protein -
  QZH53_RS01690 - 331453..331911 (+) 459 WP_001514824.1 response regulator -
  QZH53_RS01695 - 331908..333080 (+) 1173 WP_001514825.1 response regulator -
  QZH53_RS24985 - 333236..333355 (+) 120 WP_077258877.1 IS1 family transposase -
  QZH53_RS01700 - 333953..334285 (+) 333 WP_001514826.1 hypothetical protein -
  QZH53_RS01705 - 334282..335523 (+) 1242 WP_001514827.1 PfkB family carbohydrate kinase -
  QZH53_RS01710 - 335520..336125 (+) 606 WP_016236833.1 7-cyano-7-deazaguanine synthase -
  QZH53_RS01715 - 336091..336777 (+) 687 WP_224376115.1 dehydrogenase -
  QZH53_RS01720 - 336721..337566 (-) 846 WP_001514830.1 hypothetical protein -
  QZH53_RS01725 - 337563..338129 (-) 567 WP_001514831.1 DNA adenine methylase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.81 Da        Isoelectric Point: 5.2456

>NTDB_id=856703 QZH53_RS01655 WP_023310055.1 322136..322666(+) (ssb) [Enterobacter asburiae strain IK3]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=856703 QZH53_RS01655 WP_023310055.1 322136..322666(+) (ssb) [Enterobacter asburiae strain IK3]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACGACTGAAGTCGTGGTCAACGTGGG
CGGTACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCTGGCGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2V7Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364