Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QZL43_RS14700 Genome accession   NZ_CP129938
Coordinates   3152979..3153509 (-) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain BM21A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3147979..3158509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL43_RS14680 - 3148303..3148632 (-) 330 WP_005481006.1 MSHA biogenesis protein MshK -
  QZL43_RS14685 gspM 3148625..3149275 (-) 651 WP_042771014.1 type II secretion system protein GspM -
  QZL43_RS14690 - 3149272..3150717 (-) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  QZL43_RS14695 csrD 3150729..3152738 (-) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  QZL43_RS14700 ssb 3152979..3153509 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  QZL43_RS14705 qstR 3153788..3154432 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  QZL43_RS14710 galU 3154690..3155562 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=856536 QZL43_RS14700 WP_005466625.1 3152979..3153509(-) (ssb) [Vibrio parahaemolyticus strain BM21A]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=856536 QZL43_RS14700 WP_005466625.1 3152979..3153509(-) (ssb) [Vibrio parahaemolyticus strain BM21A]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAGCAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483