Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   QZL43_RS14705 Genome accession   NZ_CP129938
Coordinates   3153788..3154432 (+) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain BM21A     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3148788..3159432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL43_RS14690 - 3149272..3150717 (-) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  QZL43_RS14695 csrD 3150729..3152738 (-) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  QZL43_RS14700 ssb 3152979..3153509 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  QZL43_RS14705 qstR 3153788..3154432 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  QZL43_RS14710 galU 3154690..3155562 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QZL43_RS14715 uvrA 3155700..3158522 (+) 2823 WP_042771021.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=856537 QZL43_RS14705 WP_005480993.1 3153788..3154432(+) (qstR) [Vibrio parahaemolyticus strain BM21A]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=856537 QZL43_RS14705 WP_005480993.1 3153788..3154432(+) (qstR) [Vibrio parahaemolyticus strain BM21A]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAGCGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGACCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523