Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QY062_RS00985 Genome accession   NZ_CP129891
Coordinates   194846..195208 (+) Length   120 a.a.
NCBI ID   WP_013059785.1    Uniprot ID   -
Organism   Priestia megaterium strain ZS-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 189846..200208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY062_RS00955 (QY062_00950) - 190035..191036 (+) 1002 WP_013059791.1 rod shape-determining protein -
  QY062_RS00960 (QY062_00955) - 191151..191975 (+) 825 WP_029319385.1 flagellar hook-basal body protein -
  QY062_RS00965 (QY062_00960) - 191999..192820 (+) 822 WP_013059789.1 flagellar hook-basal body protein -
  QY062_RS00970 (QY062_00965) fabZ 192904..193338 (+) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QY062_RS00975 (QY062_00970) - 193367..193789 (-) 423 WP_013059787.1 helix-turn-helix domain-containing protein -
  QY062_RS00980 (QY062_00975) - 194312..194749 (-) 438 WP_014457773.1 YwpF-like family protein -
  QY062_RS00985 (QY062_00980) ssbB 194846..195208 (+) 363 WP_013059785.1 single-stranded DNA-binding protein Machinery gene
  QY062_RS00990 (QY062_00985) - 195746..196792 (-) 1047 WP_063670706.1 LysM peptidoglycan-binding domain-containing protein -
  QY062_RS00995 (QY062_00990) - 197090..199720 (-) 2631 WP_406643782.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13486.22 Da        Isoelectric Point: 7.1647

>NTDB_id=856287 QY062_RS00985 WP_013059785.1 194846..195208(+) (ssbB) [Priestia megaterium strain ZS-3]
MINHIILVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGFSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=856287 QY062_RS00985 WP_013059785.1 194846..195208(+) (ssbB) [Priestia megaterium strain ZS-3]
ATGATTAACCATATTATTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTCGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAAAGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTTTTCTTCATTTGATTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.604

88.333

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

88.333

0.458
  ssbB/cilA Streptococcus mitis NCTC 12261

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.509

88.333

0.367