Detailed information NTG0856140

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: QZH48_RS11515
• Genome accession: NZ_CP129879
• Coordinates: 2340635..2341060 (-)
• Length: 141 a.a.
• NCBI ID: WP_161935055.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain CAB701
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2335635..2346060

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZH48_RS11480 (QZH48_11480)	-	2335752..2336129 (-)	378	WP_038602343.1	pyridoxamine 5'-phosphate oxidase family protein	-
QZH48_RS11485 (QZH48_11485)	-	2336334..2337200 (+)	867	WP_098394207.1	RluA family pseudouridine synthase	-
QZH48_RS11490 (QZH48_11490)	-	2337238..2338047 (-)	810	WP_038602349.1	metal ABC transporter permease	-
QZH48_RS11495 (QZH48_11495)	-	2338040..2338777 (-)	738	WP_021723055.1	metal ABC transporter ATP-binding protein	-
QZH48_RS11500 (QZH48_11500)	-	2338955..2339797 (-)	843	WP_038602352.1	metal ABC transporter substrate-binding protein	-
QZH48_RS11505 (QZH48_11505)	-	2339794..2340231 (-)	438	WP_021721874.1	zinc-dependent MarR family transcriptional regulator	-
QZH48_RS11510 (QZH48_11510)	comGG	2340312..2340587 (-)	276	WP_021721873.1	hypothetical protein	Machinery gene
QZH48_RS11515 (QZH48_11515)	comGF	2340635..2341060 (-)	426	WP_161935055.1	competence type IV pilus minor pilin ComGF	Machinery gene
QZH48_RS11520 (QZH48_11520)	comGE	2341044..2341340 (-)	297	WP_038602356.1	competence type IV pilus minor pilin ComGE	Machinery gene
QZH48_RS11525 (QZH48_11525)	comGD	2341312..2341710 (-)	399	WP_301675732.1	competence type IV pilus minor pilin ComGD	Machinery gene
QZH48_RS11530 (QZH48_11530)	comGC	2341703..2342086 (-)	384	WP_080739889.1	competence type IV pilus major pilin ComGC	Machinery gene
QZH48_RS11535 (QZH48_11535)	comGB	2342100..2343173 (-)	1074	WP_080739890.1	competence type IV pilus assembly protein ComGB	Machinery gene
QZH48_RS11540 (QZH48_11540)	comGA	2343067..2344005 (-)	939	WP_058205111.1	competence type IV pilus ATPase ComGA	Machinery gene

Sequence

Protein

• Length: 141 a.a.
• Molecular weight: 16263.98 Da
• Isoelectric Point: 9.3852

>NTDB_id=856140 QZH48_RS11515 WP_161935055.1 2340635..2341060(-) (comGF) [Lactococcus lactis subsp. lactis strain CAB701]
MNLKVKAFTLLECLVALLAISGSVLVISGLTKMLKEQMAISQSDSIKDWQIFCQQMRFELSGTKLDKVEQNFLYVTKDKK
LRFGFMNDDFRKTDDKGQGYQPMLYDIKGAKIQATKNLITIRIDFNQGGERTFIYQFPEDK

Nucleotide

• Length: 426 bp

>NTDB_id=856140 QZH48_RS11515 WP_161935055.1 2340635..2341060(-) (comGF) [Lactococcus lactis subsp. lactis strain CAB701]
TTGAACCTCAAAGTTAAAGCATTTACCTTGTTGGAGTGTTTGGTGGCACTTCTTGCAATTTCTGGATCAGTCCTTGTCAT
CTCAGGTTTAACAAAGATGTTGAAAGAACAAATGGCGATTAGTCAAAGTGATAGCATAAAAGATTGGCAAATTTTCTGTC
AGCAAATGCGTTTTGAACTCTCAGGAACAAAATTAGATAAGGTAGAACAGAATTTTCTATATGTAACTAAAGATAAAAAA
CTAAGGTTTGGTTTTATGAATGATGATTTCCGGAAGACTGATGACAAAGGTCAGGGTTATCAGCCAATGCTTTATGATAT
AAAAGGGGCTAAGATTCAAGCTACTAAAAATCTAATAACCATAAGAATTGATTTTAATCAAGGAGGTGAAAGAACATTTA
TCTATCAATTTCCAGAAGACAAATAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (41-130)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Lactococcus lactis subsp. cremoris KW2	78.723	100	0.787
comYF	Streptococcus mutans UA140	48.551	97.872	0.475
comYF	Streptococcus mutans UA159	47.826	97.872	0.468
comGF/cglF	Streptococcus mitis SK321	42.143	99.291	0.418
comGF/cglF	Streptococcus pneumoniae Rx1	40.714	99.291	0.404
comGF/cglF	Streptococcus pneumoniae D39	40.714	99.291	0.404
comGF/cglF	Streptococcus pneumoniae R6	40.714	99.291	0.404
comGF/cglF	Streptococcus pneumoniae TIGR4	40.714	99.291	0.404
comGF/cglF	Streptococcus mitis NCTC 12261	40.714	99.291	0.404