Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   Q0F97_RS01155 Genome accession   NZ_CP129878
Coordinates   251373..252641 (-) Length   422 a.a.
NCBI ID   WP_252922484.1    Uniprot ID   -
Organism   Tetragenococcus halophilus strain H2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 246373..257641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0F97_RS01120 (Q0F97_01115) pepV 246456..247868 (+) 1413 WP_069028567.1 dipeptidase PepV -
  Q0F97_RS01125 (Q0F97_01120) - 247977..248318 (-) 342 WP_061840694.1 hypothetical protein -
  Q0F97_RS01130 (Q0F97_01125) - 248410..248562 (-) 153 Protein_224 aminoglycoside 6-adenylyltransferase -
  Q0F97_RS01135 (Q0F97_01130) pepA 248706..249782 (+) 1077 WP_103100139.1 glutamyl aminopeptidase -
  Q0F97_RS01140 (Q0F97_01135) - 249870..250184 (+) 315 WP_061840692.1 thioredoxin family protein -
  Q0F97_RS01145 (Q0F97_01140) - 250207..250665 (+) 459 WP_014123648.1 universal stress protein -
  Q0F97_RS01150 (Q0F97_01145) ytpR 250718..251329 (+) 612 WP_014123649.1 YtpR family tRNA-binding protein -
  Q0F97_RS01155 (Q0F97_01150) htrA 251373..252641 (-) 1269 WP_252922484.1 S1C family serine protease Regulator
  Q0F97_RS01160 (Q0F97_01155) rlmH 252983..253462 (+) 480 WP_069028570.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  Q0F97_RS01165 (Q0F97_01160) - 253506..254033 (+) 528 WP_061840689.1 AAA family ATPase -
  Q0F97_RS01170 (Q0F97_01165) msrA 254260..255087 (+) 828 WP_252922485.1 peptide-methionine (S)-S-oxide reductase MsrA -
  Q0F97_RS01175 (Q0F97_01170) - 255182..255661 (+) 480 WP_103083696.1 C-GCAxxG-C-C family protein -
  Q0F97_RS01180 (Q0F97_01175) - 255665..256597 (+) 933 WP_069028573.1 TDT family transporter -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 44024.86 Da        Isoelectric Point: 3.7734

>NTDB_id=856080 Q0F97_RS01155 WP_252922484.1 251373..252641(-) (htrA) [Tetragenococcus halophilus strain H2]
MAKKNVTPDSKKGGWIKKFGIGLLGGLIGGLLVIGGFYYFSNGNPFQTNEATSSSGVTDNNDDVQVSDVKVDADSDTTDA
VENVQNAVVSVINLQNSSPQESGGIFGTEQPEGNSEDDEEPAGEGSGVIYKEDGGDAYIVTNNHVVAGQSGLEVVMADGS
REQAELVGTDAYTDLAVLKISSDNVDTVATFGDSDELQVGEPAIAIGSPLGSDYANSVTQGIISSVNRLVSRKNESGEDV
STNAIQTDAAINPGNSGGPLVNAGGQVVGINSSKIASSGQAGVSVEGMGFAIPSNDVTDIINELEENGEIARPALGISIL
DLNTIPTEQRQRVLQIPEDVENGVVVENPGDGTPASDAGLEQYDVITKVDDKEIKDSTELRAALYEKSVGDTLKLTFYRQ
DDAQSVNVKLSEDQSIIESNNE

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=856080 Q0F97_RS01155 WP_252922484.1 251373..252641(-) (htrA) [Tetragenococcus halophilus strain H2]
ATGGCAAAAAAGAATGTAACACCTGATTCTAAAAAAGGCGGGTGGATTAAAAAATTCGGAATTGGCCTATTAGGTGGATT
AATAGGCGGGTTACTTGTCATTGGCGGCTTTTATTATTTTTCTAATGGTAACCCATTTCAAACAAATGAAGCAACTTCTT
CATCTGGCGTAACAGATAATAACGACGACGTACAGGTCAGTGATGTTAAAGTTGATGCCGATAGTGATACCACAGACGCT
GTAGAAAATGTACAAAATGCTGTCGTTTCAGTGATCAATTTACAAAACTCTTCTCCTCAAGAAAGCGGAGGTATTTTTGG
CACCGAGCAACCAGAAGGCAACTCTGAAGACGACGAGGAGCCAGCTGGTGAAGGTAGTGGTGTGATTTACAAAGAAGATG
GCGGCGATGCCTACATTGTAACAAATAATCACGTAGTTGCCGGACAAAGTGGCTTAGAAGTAGTTATGGCAGACGGTAGT
AGAGAACAAGCAGAATTAGTAGGTACTGATGCTTATACTGACTTAGCCGTATTAAAAATTTCTTCTGATAATGTAGACAC
AGTAGCTACATTCGGTGATTCTGATGAATTACAAGTAGGTGAACCAGCGATCGCTATTGGTTCTCCTCTAGGTTCTGATT
ATGCTAATTCAGTAACCCAAGGAATTATTTCTTCAGTCAATCGTTTAGTATCCAGAAAAAATGAATCTGGCGAAGATGTG
AGCACAAATGCTATTCAAACGGACGCTGCAATCAACCCAGGAAATTCTGGCGGGCCATTGGTCAATGCTGGTGGACAAGT
TGTTGGAATTAACTCCAGTAAAATTGCTAGTTCCGGACAAGCTGGCGTAAGTGTTGAAGGCATGGGCTTTGCTATTCCAA
GTAATGATGTAACAGATATTATTAATGAATTGGAAGAAAATGGTGAAATTGCTCGTCCAGCGTTAGGCATCTCCATACTT
GATTTAAATACCATTCCTACAGAACAAAGACAACGTGTTTTACAAATCCCTGAGGATGTAGAAAACGGCGTTGTTGTAGA
AAACCCTGGCGATGGCACACCAGCAAGTGATGCAGGATTAGAACAATATGATGTTATTACAAAAGTTGACGATAAAGAAA
TAAAAGATTCTACTGAGCTACGTGCCGCTTTATATGAAAAATCAGTAGGAGATACTTTGAAATTGACTTTTTATCGACAA
GATGACGCACAATCTGTAAATGTTAAACTATCAGAAGATCAATCAATCATTGAAAGCAACAACGAATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(314-410)

Peptidase family M50 (Peptidase_M50)

(317-414)

Trypsin-like peptidase domain (Trypsin_2)

(125-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

57.542

84.834

0.488
  htrA Streptococcus mitis NCTC 12261

50.256

92.417

0.464
  htrA Streptococcus pneumoniae Rx1

49.744

92.417

0.46
  htrA Streptococcus pneumoniae D39

49.744

92.417

0.46
  htrA Streptococcus pneumoniae R6

49.744

92.417

0.46
  htrA Streptococcus pneumoniae TIGR4

49.744

92.417

0.46
  htrA Streptococcus gordonii str. Challis substr. CH1

49.235

92.891

0.457