Detailed information
Bioinformatically predicted
Overview
| Name | comYB | Type | Machinery gene |
| Locus tag | QZN14_RS01105 | Genome accession | NZ_CP129875 |
| Coordinates | 190728..191771 (+) | Length | 347 a.a. |
| NCBI ID | WP_223297804.1 | Uniprot ID | - |
| Organism | Streptococcus agalactiae COH1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 185728..196771
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QZN14_RS01095 | - | 189326..189691 (+) | 366 | WP_000285373.1 | DUF1033 family protein | - |
| QZN14_RS01100 | comGA | 189863..190834 (+) | 972 | Protein_163 | competence type IV pilus ATPase ComGA | - |
| QZN14_RS01105 | comYB | 190728..191771 (+) | 1044 | WP_223297804.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| QZN14_RS01110 | comGF | 191796..192224 (+) | 429 | WP_223842274.1 | competence type IV pilus minor pilin ComGF | - |
| QZN14_RS01115 | comGG | 192202..192425 (+) | 224 | Protein_166 | competence type IV pilus minor pilin ComGG | - |
| QZN14_RS01120 | comYH | 192540..193514 (+) | 975 | WP_001008572.1 | class I SAM-dependent methyltransferase | Machinery gene |
| QZN14_RS01125 | - | 193546..194739 (+) | 1194 | WP_000047534.1 | acetate kinase | - |
| QZN14_RS01130 | - | 194890..195096 (+) | 207 | WP_000798241.1 | helix-turn-helix transcriptional regulator | - |
| QZN14_RS01135 | - | 195155..195292 (+) | 138 | WP_001869149.1 | hypothetical protein | - |
| QZN14_RS01140 | - | 195333..195788 (+) | 456 | WP_000905672.1 | hypothetical protein | - |
| QZN14_RS01145 | - | 195857..196522 (+) | 666 | WP_000008107.1 | type II CAAX endopeptidase family protein | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 40014.77 Da Isoelectric Point: 9.9642
>NTDB_id=855976 QZN14_RS01105 WP_223297804.1 190728..191771(+) (comYB) [Streptococcus agalactiae COH1]
MDKWISWLKKDISVRNRHKSKKLSLKKQRKVVQLFNNLFASGFSLTDMVTFLKRSKLLSDCYTDRMNKALLEGKDLSKML
GELGFSDTVITQVALADLHGNISRSLLKIESYLANLLLVRKKVIEVATYPLILLSFLVLIMIGLRHYLMPQLGENNFATR
LITNVPNIFLLLLAVVLIFSLIFYIIQKRLSRIKVACFLTTIPLVGSYVKLYLTAYYAREWGNLLSQGVELDQIVKVMQN
QKSKLFREIGYDMEEGFLSGKAFHQKVLDYPFFLTELSLMIEYGQVKAKLGTELDIYADEKWEDFFTKLARATQLIQPVI
FIFVALIIVMIYAAMLLPMYQNMEILS
MDKWISWLKKDISVRNRHKSKKLSLKKQRKVVQLFNNLFASGFSLTDMVTFLKRSKLLSDCYTDRMNKALLEGKDLSKML
GELGFSDTVITQVALADLHGNISRSLLKIESYLANLLLVRKKVIEVATYPLILLSFLVLIMIGLRHYLMPQLGENNFATR
LITNVPNIFLLLLAVVLIFSLIFYIIQKRLSRIKVACFLTTIPLVGSYVKLYLTAYYAREWGNLLSQGVELDQIVKVMQN
QKSKLFREIGYDMEEGFLSGKAFHQKVLDYPFFLTELSLMIEYGQVKAKLGTELDIYADEKWEDFFTKLARATQLIQPVI
FIFVALIIVMIYAAMLLPMYQNMEILS
Nucleotide
Download Length: 1044 bp
>NTDB_id=855976 QZN14_RS01105 WP_223297804.1 190728..191771(+) (comYB) [Streptococcus agalactiae COH1]
ATAGACAAGTGGATATCTTGGCTGAAGAAGGACATATCAGTAAGAAACAGGCACAAGTCGAAAAAATTATCCCTCAAGAA
ACAACGGAAAGTAGTCCAACTTTTTAATAATCTTTTTGCTAGTGGTTTTTCTTTAACTGATATGGTCACCTTCTTAAAGA
GGAGTAAGTTATTGTCTGATTGTTATACAGATAGGATGAATAAGGCATTATTAGAGGGAAAAGATTTATCAAAAATGTTA
GGAGAGTTAGGTTTTTCTGACACTGTTATCACACAGGTTGCATTAGCTGATTTGCATGGTAACATTTCAAGGAGCCTACT
AAAGATTGAGTCTTATTTAGCTAATCTTTTGTTAGTTAGAAAAAAAGTAATAGAAGTAGCTACTTACCCATTGATATTAT
TGTCTTTTCTGGTGCTAATTATGATTGGCCTTAGGCATTATTTAATGCCCCAATTAGGAGAAAATAATTTTGCAACTAGA
CTGATTACAAATGTGCCGAATATTTTCTTATTACTTTTAGCAGTTGTACTTATTTTTAGTTTAATATTTTATATTATTCA
AAAGCGATTGTCGCGCATTAAAGTAGCTTGTTTTTTAACAACAATTCCCTTAGTTGGATCATATGTTAAGCTTTATTTAA
CTGCTTACTATGCCCGTGAGTGGGGAAATTTATTAAGTCAAGGTGTTGAATTGGACCAAATTGTTAAAGTAATGCAAAAT
CAGAAATCCAAACTTTTTAGGGAAATAGGATATGACATGGAAGAAGGTTTTCTATCAGGTAAAGCATTTCACCAAAAAGT
ATTAGACTATCCGTTTTTCTTAACTGAGCTTAGTTTAATGATTGAATATGGTCAAGTTAAGGCGAAATTAGGAACAGAGT
TAGATATATATGCTGATGAGAAGTGGGAGGATTTTTTTACAAAATTAGCTAGAGCGACCCAATTAATCCAACCCGTTATT
TTTATTTTTGTAGCTCTTATCATTGTTATGATTTATGCAGCAATGCTGTTACCAATGTATCAAAATATGGAGATATTATC
ATGA
ATAGACAAGTGGATATCTTGGCTGAAGAAGGACATATCAGTAAGAAACAGGCACAAGTCGAAAAAATTATCCCTCAAGAA
ACAACGGAAAGTAGTCCAACTTTTTAATAATCTTTTTGCTAGTGGTTTTTCTTTAACTGATATGGTCACCTTCTTAAAGA
GGAGTAAGTTATTGTCTGATTGTTATACAGATAGGATGAATAAGGCATTATTAGAGGGAAAAGATTTATCAAAAATGTTA
GGAGAGTTAGGTTTTTCTGACACTGTTATCACACAGGTTGCATTAGCTGATTTGCATGGTAACATTTCAAGGAGCCTACT
AAAGATTGAGTCTTATTTAGCTAATCTTTTGTTAGTTAGAAAAAAAGTAATAGAAGTAGCTACTTACCCATTGATATTAT
TGTCTTTTCTGGTGCTAATTATGATTGGCCTTAGGCATTATTTAATGCCCCAATTAGGAGAAAATAATTTTGCAACTAGA
CTGATTACAAATGTGCCGAATATTTTCTTATTACTTTTAGCAGTTGTACTTATTTTTAGTTTAATATTTTATATTATTCA
AAAGCGATTGTCGCGCATTAAAGTAGCTTGTTTTTTAACAACAATTCCCTTAGTTGGATCATATGTTAAGCTTTATTTAA
CTGCTTACTATGCCCGTGAGTGGGGAAATTTATTAAGTCAAGGTGTTGAATTGGACCAAATTGTTAAAGTAATGCAAAAT
CAGAAATCCAAACTTTTTAGGGAAATAGGATATGACATGGAAGAAGGTTTTCTATCAGGTAAAGCATTTCACCAAAAAGT
ATTAGACTATCCGTTTTTCTTAACTGAGCTTAGTTTAATGATTGAATATGGTCAAGTTAAGGCGAAATTAGGAACAGAGT
TAGATATATATGCTGATGAGAAGTGGGAGGATTTTTTTACAAAATTAGCTAGAGCGACCCAATTAATCCAACCCGTTATT
TTTATTTTTGTAGCTCTTATCATTGTTATGATTTATGCAGCAATGCTGTTACCAATGTATCAAAATATGGAGATATTATC
ATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYB | Streptococcus mutans UA140 |
62.17 |
98.271 |
0.611 |
| comYB | Streptococcus mutans UA159 |
61.877 |
98.271 |
0.608 |
| comYB | Streptococcus gordonii str. Challis substr. CH1 |
56.012 |
98.271 |
0.55 |
| comGB/cglB | Streptococcus mitis NCTC 12261 |
54.925 |
96.542 |
0.53 |
| comGB/cglB | Streptococcus mitis SK321 |
54.328 |
96.542 |
0.524 |
| comGB/cglB | Streptococcus pneumoniae Rx1 |
53.433 |
96.542 |
0.516 |
| comGB/cglB | Streptococcus pneumoniae D39 |
53.433 |
96.542 |
0.516 |
| comGB/cglB | Streptococcus pneumoniae R6 |
53.433 |
96.542 |
0.516 |
| comGB/cglB | Streptococcus pneumoniae TIGR4 |
53.433 |
96.542 |
0.516 |
| comGB | Lactococcus lactis subsp. cremoris KW2 |
50.148 |
97.118 |
0.487 |