Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QYQ99_RS11965 Genome accession   NZ_CP129672
Coordinates   2636254..2637792 (+) Length   512 a.a.
NCBI ID   WP_302092837.1    Uniprot ID   -
Organism   Comamonas testosteroni strain MWF001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2631254..2642792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ99_RS11945 (QYQ99_11945) - 2631985..2633313 (-) 1329 WP_302092833.1 sulfatase -
  QYQ99_RS11950 (QYQ99_11950) - 2633427..2634419 (-) 993 WP_302092834.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  QYQ99_RS11955 (QYQ99_11955) - 2634554..2635528 (-) 975 WP_302092835.1 tripartite tricarboxylate transporter substrate binding protein -
  QYQ99_RS11960 (QYQ99_11960) - 2635621..2636169 (+) 549 WP_302092836.1 MarR family winged helix-turn-helix transcriptional regulator -
  QYQ99_RS11965 (QYQ99_11965) comM 2636254..2637792 (+) 1539 WP_302092837.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QYQ99_RS11970 (QYQ99_11970) - 2637806..2638735 (-) 930 WP_302092838.1 LysR substrate-binding domain-containing protein -
  QYQ99_RS11975 (QYQ99_11975) - 2638845..2640023 (+) 1179 WP_302092839.1 YbfB/YjiJ family MFS transporter -
  QYQ99_RS11980 (QYQ99_11980) - 2640057..2641124 (+) 1068 WP_302092840.1 nitronate monooxygenase family protein -
  QYQ99_RS11985 (QYQ99_11985) - 2641176..2642459 (-) 1284 WP_302092841.1 CaiB/BaiF CoA-transferase family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54775.66 Da        Isoelectric Point: 7.3501

>NTDB_id=854852 QYQ99_RS11965 WP_302092837.1 2636254..2637792(+) (comM) [Comamonas testosteroni strain MWF001]
MGLALVQSRALLGLQAPAVTVEVHLANGLPSFTLVGLADVEVKEARERVRAAIVNAGLEFPNNQRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAQRLADYEFAGELSLTGALRPVRGALATALALQRQQQRVRLVLPPDSALEAAFVPAIEVFGA
AHLLDVVRQFIAHDATPSEQGDGVEGWQRVHSRPAEASLPSLDLREVRGQMQAKRALEIAAAGAHGVLMIGPPGSGKSML
AQRFAGLLPGMTDEEALEAAAIASLSGRFTPQLWRQRPFAAPHHTASSVALVGGGSPPRPGEISYAHCGALFLDELPEFA
RSALEALREPLETGRITIVRAVQRAEFPARFQLVAAMNPCPCGYWGSRVRACRCSPDQVARYQARISGPLLDRIDLHVEV
AALSPEELLAAPEGQSSAAVQQRVSAARDKALQRQGLPNHQLQGVQLDTHLQLEPEALTFAHKAATRLGWSARGTHRALK
VARTIADLADSDAITQTHLAEALQYRRALMQP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=854852 QYQ99_RS11965 WP_302092837.1 2636254..2637792(+) (comM) [Comamonas testosteroni strain MWF001]
ATGGGTCTGGCACTGGTTCAAAGTCGTGCCCTGCTGGGCCTGCAGGCACCGGCTGTCACGGTGGAGGTCCATCTGGCCAA
CGGACTGCCTTCGTTCACGCTGGTGGGCCTGGCGGATGTGGAGGTCAAGGAGGCCCGCGAGCGCGTACGCGCGGCCATCG
TCAATGCGGGGCTGGAGTTCCCGAACAACCAGCGCATCACGGTCAACCTGGCTCCGGCAGATCTGCCCAAGGACTCAGGC
CGCTTTGACCTGCCGATAGCGCTGGGAATTCTGGCTGCCAGCGGCCAGATCGATGCACAGCGGCTCGCCGATTATGAGTT
TGCAGGAGAGCTGTCCCTGACCGGTGCCCTGCGCCCGGTACGCGGCGCCCTGGCTACGGCGCTGGCCCTGCAGCGTCAGC
AACAGCGCGTGCGCCTGGTGCTGCCGCCGGACAGTGCGCTGGAGGCCGCTTTCGTGCCGGCAATCGAAGTCTTCGGCGCT
GCGCATCTGCTGGATGTGGTCAGGCAGTTCATCGCGCATGACGCCACCCCGTCGGAGCAGGGCGATGGCGTGGAGGGCTG
GCAGCGGGTGCACTCCAGACCTGCTGAAGCTTCTTTGCCGTCGCTGGATCTGCGCGAGGTGCGCGGCCAGATGCAGGCCA
AGCGCGCGCTTGAAATTGCAGCTGCCGGCGCACATGGTGTGCTGATGATCGGCCCTCCGGGTTCGGGAAAATCCATGCTG
GCCCAGCGCTTTGCGGGTTTGCTGCCCGGCATGACCGATGAGGAAGCGCTCGAAGCCGCAGCCATTGCCAGCCTCAGCGG
TCGTTTCACGCCGCAGTTGTGGCGCCAGCGGCCGTTTGCCGCTCCCCATCACACGGCCAGCTCCGTCGCGCTGGTCGGCG
GCGGCTCTCCGCCCCGGCCTGGCGAAATCTCCTATGCCCATTGCGGGGCGCTTTTTCTGGACGAGCTGCCTGAGTTCGCG
CGCAGTGCCCTGGAGGCCTTGCGCGAGCCGCTGGAGACCGGTCGCATCACCATCGTGCGGGCTGTGCAGAGGGCGGAGTT
TCCGGCCCGTTTCCAGTTGGTGGCAGCCATGAACCCCTGCCCCTGCGGCTACTGGGGCTCGCGCGTCAGGGCCTGCCGCT
GCTCGCCTGATCAGGTGGCACGTTATCAGGCGCGCATCAGCGGGCCCTTGCTGGACCGTATCGATCTGCATGTGGAGGTG
GCGGCACTGTCGCCCGAGGAACTTCTGGCAGCGCCCGAAGGGCAGAGCAGCGCGGCCGTGCAGCAACGCGTGAGTGCAGC
CAGAGACAAGGCCTTGCAGCGCCAGGGCCTGCCCAATCATCAGTTGCAGGGCGTGCAGCTCGACACGCATCTGCAGCTGG
AGCCCGAGGCGCTGACCTTTGCGCACAAGGCTGCAACGCGCCTTGGCTGGTCGGCACGCGGCACGCACCGGGCCTTGAAG
GTGGCGCGAACCATCGCCGATCTGGCGGACTCGGATGCCATCACGCAAACCCATCTGGCCGAGGCATTGCAGTACCGCCG
CGCGCTGATGCAGCCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-407)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.446

99.805

0.523
  comM Vibrio campbellii strain DS40M4

50.584

100

0.508
  comM Haemophilus influenzae Rd KW20

50.197

99.219

0.498
  comM Glaesserella parasuis strain SC1401

49.902

99.805

0.498
  comM Legionella pneumophila str. Paris

47.692

100

0.484
  comM Legionella pneumophila strain ERS1305867

47.692

100

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.725

99.609

0.436