Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QYF67_RS25990 Genome accession   NZ_CP129532
Coordinates   5572583..5574076 (+) Length   497 a.a.
NCBI ID   WP_036994859.1    Uniprot ID   A0AAP0XG72
Organism   Pseudomonas donghuensis strain SVBP6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5567583..5579076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYF67_RS25960 (QYF67_25960) - 5568040..5568735 (+) 696 WP_010221120.1 HAD family hydrolase -
  QYF67_RS25965 (QYF67_25965) sutA 5568884..5569207 (-) 324 WP_010221119.1 transcriptional regulator SutA -
  QYF67_RS25970 (QYF67_25970) - 5569671..5571002 (-) 1332 WP_100781853.1 ammonium transporter -
  QYF67_RS25975 (QYF67_25975) glnK 5571046..5571384 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  QYF67_RS25980 (QYF67_25980) - 5571714..5571977 (+) 264 WP_010221117.1 accessory factor UbiK family protein -
  QYF67_RS25985 (QYF67_25985) - 5571985..5572338 (+) 354 WP_010221116.1 gamma-glutamylcyclotransferase family protein -
  QYF67_RS25990 (QYF67_25990) comM 5572583..5574076 (+) 1494 WP_036994859.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QYF67_RS25995 (QYF67_25995) - 5574132..5575562 (+) 1431 WP_100781854.1 mechanosensitive ion channel family protein -
  QYF67_RS26000 (QYF67_26000) - 5575566..5576852 (-) 1287 WP_036994855.1 FAD-binding oxidoreductase -
  QYF67_RS26005 (QYF67_26005) - 5576972..5578462 (-) 1491 WP_304528177.1 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52901.63 Da        Isoelectric Point: 7.3467

>NTDB_id=854170 QYF67_RS25990 WP_036994859.1 5572583..5574076(+) (comM) [Pseudomonas donghuensis strain SVBP6]
MSLALVHSRAQVGVSAPAVSVEAHLANGLPALTLVGLPEATVKESKDRVRSAILNSGLEFPARRITLNLAPADLPKDGGR
FDLAIALGILAANGQFPIAALGEVECLGELALSGAIRSVQGVLPAALAAREAGRALVVPQENAEEACLASGLVVFAVSHL
LELVAHFNGQTPLNPYAANGLLLQIRPYPDLNEVQGQQAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIQSVASHVPLSSWPQRPFRHPHHSASGAALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARAKDKIRFPARFQLVAAMNPCPCGYLGDPTGRCRCSSEQIQRYRNKLSGPLLDRIDLHLTVAREATALSPNSRH
GESSATIAAQVAAARDIQQQRQGCANAFLDLPGLRQYCGLSTADQTWLESACERLTLSLRAAHRLLKVARTLADLEQVES
IGREHLAEALHYRPSNQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=854170 QYF67_RS25990 WP_036994859.1 5572583..5574076(+) (comM) [Pseudomonas donghuensis strain SVBP6]
ATGTCCCTCGCCCTTGTCCACAGCCGTGCCCAGGTCGGTGTTTCGGCCCCGGCAGTCAGTGTTGAAGCGCATCTGGCCAA
TGGTTTGCCGGCGCTGACCCTGGTTGGCCTGCCGGAAGCGACCGTGAAGGAAAGCAAGGATCGGGTGCGCAGCGCGATCC
TCAATTCCGGCCTGGAATTCCCCGCCCGGCGCATCACCCTCAACCTCGCGCCAGCGGACCTGCCCAAGGATGGCGGGCGC
TTCGACCTGGCCATCGCCCTGGGGATTCTCGCCGCCAACGGCCAATTCCCGATTGCAGCGCTTGGCGAAGTGGAGTGCCT
GGGTGAACTGGCGCTGTCCGGGGCGATCCGCTCGGTGCAAGGCGTATTACCCGCCGCATTGGCCGCACGGGAGGCCGGCC
GAGCCCTGGTGGTACCGCAGGAAAATGCCGAGGAAGCCTGCCTGGCGTCTGGGCTCGTAGTGTTTGCAGTCAGCCATCTG
TTGGAACTGGTCGCCCACTTCAACGGCCAGACCCCGCTCAACCCTTACGCCGCCAACGGTTTGCTGCTGCAGATTCGCCC
CTACCCCGACCTCAACGAAGTGCAGGGCCAGCAAGCTGCCAAGCGCGCGCTGCTGGTCGCCGCCGCAGGCGCACACAACC
TGCTGTTCAGCGGCCCACCGGGCACCGGCAAGACCCTGCTCGCCAGCCGCCTGCCCGGCCTGCTGCCGCCGCTGGATGAA
CGCGAAGCGCTGGAGGTGGCGGCGATCCAGTCGGTGGCCAGCCATGTACCACTGAGCAGCTGGCCGCAGCGGCCGTTTCG
TCACCCGCACCATTCGGCCTCAGGTGCTGCGCTGGTCGGCGGTGGCAGCCGACCGCAGCCCGGGGAAATAACCCTGGCCC
ACCACGGCGTGCTGTTTCTCGATGAGCTGCCAGAGTTCGAACGGCGGGTGCTGGAGGTGCTGCGCGAGCCCCTGGAATCC
GGCGAAATCGTCATCGCCCGGGCCAAGGACAAGATCCGCTTTCCGGCGCGCTTCCAGCTGGTCGCCGCCATGAACCCCTG
CCCCTGTGGATATCTTGGCGACCCCACTGGCCGTTGCCGCTGCAGCAGCGAACAGATCCAGCGCTACCGCAACAAACTCT
CCGGCCCCTTGCTCGACCGTATCGACCTGCACCTGACCGTCGCCCGCGAAGCCACGGCACTCTCCCCCAACAGCCGCCAC
GGCGAAAGCAGCGCCACCATTGCCGCGCAAGTCGCCGCCGCCCGCGACATCCAGCAACAACGCCAGGGCTGCGCCAACGC
CTTCCTCGACCTGCCCGGCCTGCGCCAGTACTGCGGGTTATCCACAGCCGACCAGACCTGGCTGGAAAGCGCCTGCGAAC
GCCTGACCCTGTCGCTGCGCGCCGCCCACCGTCTGCTCAAGGTGGCGCGCACTTTGGCTGACCTGGAACAGGTGGAAAGC
ATTGGCCGCGAGCATCTGGCTGAAGCGCTGCACTATCGCCCCAGCAACCAGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.162

99.598

0.559
  comM Vibrio campbellii strain DS40M4

55.96

99.598

0.557
  comM Haemophilus influenzae Rd KW20

54.291

100

0.547
  comM Glaesserella parasuis strain SC1401

53.693

100

0.541
  comM Legionella pneumophila str. Paris

49.597

99.799

0.495
  comM Legionella pneumophila strain ERS1305867

49.597

99.799

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.473