Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   V6U69_RS08425 Genome accession   NZ_CP145867
Coordinates   1835906..1836568 (-) Length   220 a.a.
NCBI ID   WP_002890024.1    Uniprot ID   J7T664
Organism   Streptococcus salivarius strain KSS10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1830906..1841568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS08420 (V6U69_08415) hpf 1835279..1835827 (-) 549 WP_080611550.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  V6U69_RS08425 (V6U69_08420) comFC/cflB 1835906..1836568 (-) 663 WP_002890024.1 ComF family protein Machinery gene
  V6U69_RS08430 (V6U69_08425) comFA/cflA 1836549..1837868 (-) 1320 WP_155198371.1 DEAD/DEAH box helicase Machinery gene
  V6U69_RS08435 (V6U69_08430) - 1837923..1838549 (+) 627 WP_155198370.1 YigZ family protein -
  V6U69_RS08440 (V6U69_08435) cysK 1838651..1839577 (+) 927 WP_002883742.1 cysteine synthase A -
  V6U69_RS08445 (V6U69_08440) - 1839725..1840384 (-) 660 WP_002890017.1 CBS and ACT domain-containing protein -
  V6U69_RS08450 (V6U69_08445) - 1840519..1841229 (-) 711 WP_002883761.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26137.42 Da        Isoelectric Point: 8.5995

>NTDB_id=853993 V6U69_RS08425 WP_002890024.1 1835906..1836568(-) (comFC/cflB) [Streptococcus salivarius strain KSS10]
MKCLLCNDWIESVPKLRDLIMFNQRKEYSCRSCKHQFKNLSKERCQNCNKELYGDTCIDCKLWMKKGYIPKHLAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQDIKNNLKPFLKKGYTIVPVPLSEERLAERGFNQVEGLIEGIPYRDIFEKRDIEKQSS
KTREERLSQDNAFCLKEGINLPDKIIIVDDIYTTGSTLYQMVQLLEGIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=853993 V6U69_RS08425 WP_002890024.1 1835906..1836568(-) (comFC/cflB) [Streptococcus salivarius strain KSS10]
ATGAAGTGTCTGCTATGTAATGATTGGATTGAATCAGTACCAAAATTAAGAGACCTCATTATGTTTAACCAAAGAAAAGA
GTACTCTTGCCGATCTTGTAAACATCAGTTTAAAAACCTCTCAAAAGAAAGATGTCAAAATTGTAATAAAGAGTTATATG
GAGATACTTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCTATTTATCGATATGAAGAA
AATATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAATATTTCAACAAGATATTAAAAA
CAACTTAAAACCATTTTTGAAGAAAGGTTATACCATAGTGCCAGTCCCATTATCGGAAGAACGCTTGGCAGAAAGAGGAT
TCAACCAAGTTGAGGGATTGATAGAGGGAATTCCCTATCGGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCCTCA
AAAACACGCGAGGAGCGTCTAAGTCAAGATAATGCTTTCTGTCTCAAGGAAGGTATAAATCTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACGGGTTCCACTTTATATCAGATGGTTCAACTGTTAGAAGGTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7T664

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae TIGR4

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

44.595

100

0.45
  comFC/cflB Streptococcus mitis SK321

44.144

100

0.445