Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QOM25_RS06185 Genome accession   NZ_CP129497
Coordinates   1266796..1268316 (-) Length   506 a.a.
NCBI ID   WP_301512516.1    Uniprot ID   -
Organism   Enterobacter asburiae strain MP4m4     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1261796..1273316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM25_RS06175 (QOM25_06175) hdfR 1265489..1266310 (-) 822 WP_032662787.1 HTH-type transcriptional regulator HdfR -
  QOM25_RS06180 (QOM25_06180) - 1266429..1266767 (+) 339 WP_023309658.1 DUF413 domain-containing protein -
  QOM25_RS06185 (QOM25_06185) comM 1266796..1268316 (-) 1521 WP_301512516.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QOM25_RS06190 (QOM25_06190) ilvL 1268657..1268755 (+) 99 WP_001311244.1 ilv operon leader peptide -
  QOM25_RS06195 (QOM25_06195) ilvX 1268842..1268892 (+) 51 WP_166792073.1 peptide IlvX -
  QOM25_RS06200 (QOM25_06200) ilvG 1268895..1270541 (+) 1647 WP_301512517.1 acetolactate synthase 2 catalytic subunit -
  QOM25_RS06205 (QOM25_06205) ilvM 1270538..1270801 (+) 264 WP_006179206.1 acetolactate synthase 2 small subunit -
  QOM25_RS06210 (QOM25_06210) ilvE 1270820..1271749 (+) 930 WP_023326297.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55030.05 Da        Isoelectric Point: 6.8176

>NTDB_id=853633 QOM25_RS06185 WP_301512516.1 1266796..1268316(-) (comM) [Enterobacter asburiae strain MP4m4]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLCSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAEVRERVIAAQMRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADIEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=853633 QOM25_RS06185 WP_301512516.1 1266796..1268316(-) (comM) [Enterobacter asburiae strain MP4m4]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGTAA
TGGGCTACCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTATGCTCGTATGAGTTTGT
TGGCGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGAGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCGGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGGCATGAACTGTCCGAGCCGGAGGAGTGTGATGATGCTATAGCGGATGCTCC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTTC
TGTTAATTGGTCCGCCGGGTACGGGTAAAACAATGCTGGCAAGCAGGTTGAGTGGGTTGCTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATATACAGCCTTATCAGTTCGACGTCGTTGCAAAAGCAGTGGCGGCGCCGTCCTTTTCG
TTCGCCGCATCATAGCGCTTCACTAACGGCAATGGTTGGCGGCGGGTCTATCCCCGGGCCGGGTGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCTGAGTTTGAGCGCCGCGTGCTCGATGCACTGAGGGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCACGCGAGCCAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGTTGCGTTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCCCCTCCGGGTCTGCTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGAGGTACGCGAGCGGGTGATTGCAGCCCAGATGCGGCAGTACGCTCGTCAGAACAGGCTGAATGCGCG
GCTAGATAATGCCGGGATCCGGCAATTTTGTTCTCTTAACGTTGAGGATGCGGGATGGCTGGAGGAGACGTTGACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAGCGTTTGTTGAAAGTTGCCAGAACCATTGCTGACATAGAGGGATGCACTGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Vibrio campbellii strain DS40M4

58.532

99.605

0.583
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441