Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QYL88_RS10220 Genome accession   NZ_CP129460
Coordinates   2186536..2188680 (-) Length   714 a.a.
NCBI ID   WP_103927013.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain N9-1     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2181536..2193680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYL88_RS10205 recQ 2181684..2183465 (-) 1782 WP_065354522.1 DNA helicase RecQ -
  QYL88_RS10210 - 2183475..2185352 (-) 1878 WP_015728743.1 ABC-F family ATP-binding cassette domain-containing protein -
  QYL88_RS10215 - 2185464..2186279 (+) 816 WP_015728742.1 ZIP family metal transporter -
  QYL88_RS10220 comA 2186536..2188680 (-) 2145 WP_103927013.1 peptide cleavage/export ABC transporter Regulator
  QYL88_RS10225 - 2189055..2189363 (-) 309 WP_063284913.1 DUF3884 family protein -
  QYL88_RS10230 - 2189438..2189800 (-) 363 WP_131090790.1 hypothetical protein -
  QYL88_RS10235 - 2189917..2190690 (-) 774 WP_082239536.1 glycosyltransferase -

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 81452.21 Da        Isoelectric Point: 9.8273

>NTDB_id=853517 QYL88_RS10220 WP_103927013.1 2186536..2188680(-) (comA) [Staphylococcus pseudintermedius strain N9-1]
MKFSKRFYRAQVDSQDCGAAALAMILEFYGSHYSLDFLRRKLRTTVNGTTAYGLVQVADKLGFETVPIKADISLFEIDDL
QYPFIVHVKKNNNHFHYYVVIRCDKKYIYIADPVVNLTKMPYREFKEEWTGVTILLKPTSLYKPIKQDKVRLTYFIPLLL
KEKRLIIKIIIISILVNMINILGSYFMKSIIDFYIPQKLKTWVSMISMALIASYIMQQILSYLQKYFLILLVKTYSINIL
SPYIKHLFRLPITFFETGRAGDILSRLNDANSITDALASTMLSLFLDVTIIVGISIFLYYQSTILFVLILIIIPIYAVIV
FGFMNSFERKRIKSMEANATLSSYLMENITGMETIKALTCEKKCYKQIKYNFSNYYEKTFLLNKLNIKQNVLKKVVQLIL
NVSILWVGANLVIDNQISIGTLLVFNSLVIYFMNPIENIMNLQLKLQIAGVANNRLNEIFTVKSEFEKNKLDIKLNQNSS
KLIFSNISYGYGYEKEILTDINITIEHNSKVAFIGESGSGKTTLAKMMVSFFEPSKGKITLGGLDITNINKSVLRQQIIY
IPQQTYIFNGTILENLLLGVVKEVTQKDIDSAIKMAELKSFIDSLPLGLDSVLSSDFSALSGGQRQKIALARALLTNSSI
LIMDEATSNIDILTERKIINNLMALNKTIIFISHNLNITQKVDKIFVLAKGKIIEEGSHEFLLKAKGYYSNLIN

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=853517 QYL88_RS10220 WP_103927013.1 2186536..2188680(-) (comA) [Staphylococcus pseudintermedius strain N9-1]
ATGAAATTTTCAAAACGATTTTATCGTGCACAAGTAGACTCTCAAGATTGTGGCGCGGCAGCGCTCGCTATGATATTAGA
ATTTTACGGTTCTCACTATTCTTTGGATTTTCTGAGAAGAAAGTTAAGAACAACAGTAAATGGCACTACAGCATATGGTT
TGGTTCAGGTAGCAGATAAGTTAGGTTTTGAGACAGTTCCTATTAAAGCAGATATATCTTTGTTTGAAATTGATGATTTA
CAGTATCCTTTTATCGTTCATGTTAAAAAAAATAACAATCATTTTCACTATTATGTTGTAATTAGATGTGATAAAAAGTA
TATCTATATAGCTGACCCTGTTGTTAATTTAACAAAGATGCCTTATAGGGAATTTAAAGAAGAGTGGACTGGAGTTACAA
TCTTATTAAAACCTACATCTTTATATAAGCCTATAAAGCAAGATAAAGTTCGTTTAACTTATTTTATACCTTTATTATTA
AAAGAAAAAAGATTGATTATAAAAATAATAATCATTTCCATTTTAGTCAATATGATAAATATTTTAGGTTCATATTTTAT
GAAGTCAATTATTGATTTTTATATTCCCCAAAAGTTAAAAACATGGGTTAGTATGATTTCCATGGCTTTAATTGCTTCTT
ACATTATGCAACAAATTCTTAGTTATTTGCAGAAATATTTTTTGATTTTATTAGTAAAGACATATTCTATAAATATACTT
TCACCATACATTAAACATTTGTTTAGATTACCTATTACTTTTTTTGAAACGGGAAGAGCAGGAGACATACTATCAAGACT
TAATGATGCAAATTCAATTACTGATGCTTTAGCTAGTACCATGCTATCATTGTTTTTAGATGTTACAATAATAGTTGGCA
TATCTATCTTCCTGTATTATCAAAGTACTATTTTATTTGTATTAATATTAATTATCATTCCTATTTATGCCGTAATTGTT
TTTGGTTTTATGAACTCTTTTGAACGGAAAAGAATAAAATCTATGGAGGCAAATGCTACTTTGTCTTCTTATTTGATGGA
AAATATAACAGGTATGGAGACGATAAAAGCACTGACATGTGAAAAGAAATGCTATAAGCAGATAAAATATAATTTTTCGA
ATTATTACGAAAAAACATTCTTGTTAAACAAACTAAATATAAAGCAAAACGTTTTGAAAAAGGTTGTTCAATTAATATTA
AATGTATCGATTTTATGGGTAGGCGCTAACCTAGTTATAGATAATCAAATCTCAATTGGAACTTTGCTTGTTTTTAATTC
ATTAGTGATTTACTTTATGAATCCAATAGAAAATATTATGAATTTACAGCTTAAATTACAAATAGCAGGTGTGGCTAATA
ATCGATTGAATGAAATATTCACAGTTAAATCAGAATTTGAAAAGAATAAATTGGATATCAAATTGAACCAAAACTCAAGT
AAACTTATATTTTCAAATATTTCATATGGATATGGGTACGAAAAAGAAATCCTTACAGATATTAATATAACAATAGAACA
TAATAGTAAAGTAGCCTTTATTGGAGAGTCTGGATCAGGTAAAACAACTTTGGCGAAAATGATGGTTAGTTTTTTTGAAC
CTTCAAAGGGTAAAATAACACTAGGTGGATTGGACATAACAAATATCAATAAATCTGTTTTACGACAGCAGATTATATAC
ATTCCACAACAAACTTATATTTTTAATGGAACTATACTTGAAAATCTTTTATTAGGGGTAGTTAAAGAGGTTACGCAAAA
GGACATAGATAGTGCTATTAAAATGGCTGAACTAAAATCCTTTATTGATAGCTTACCACTTGGACTTGATAGTGTATTAA
GTTCTGATTTTTCTGCTTTGTCAGGAGGTCAGCGGCAGAAGATAGCTTTAGCAAGAGCACTATTAACAAATTCTTCTATA
TTGATAATGGATGAAGCAACGAGTAATATTGATATACTCACGGAGAGAAAAATTATTAATAATTTGATGGCGTTAAATAA
AACTATTATATTTATCTCCCATAATCTAAATATAACTCAAAAAGTAGATAAAATATTTGTTTTAGCAAAAGGAAAAATTA
TAGAAGAGGGCTCACATGAATTTTTATTAAAAGCAAAAGGTTACTATTCTAACTTAATTAATTAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(8-139)

ABC transporter transmembrane region (ABC_membrane)

(167-435)

ABC transporter (ABC_tran)

(498-648)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

53.352

100

0.535
  comA Streptococcus mitis NCTC 12261

53.212

100

0.534
  comA Streptococcus pneumoniae D39

52.793

100

0.529
  comA Streptococcus pneumoniae R6

52.793

100

0.529
  comA Streptococcus pneumoniae Rx1

52.793

100

0.529
  comA Streptococcus gordonii str. Challis substr. CH1

52.793

100

0.529
  comA Streptococcus pneumoniae TIGR4

52.514

100

0.527
  comA/nlmT Streptococcus mutans UA159

48.75

100

0.492