Detailed information NTG0853424

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: QY487_RS01980
• Genome accession: NZ_CP129459
• Coordinates: 387472..388620 (+)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain SSF6
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 382472..393620

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QY487_RS01960 (QY487_01960)	-	382869..383552 (-)	684	WP_025853762.1	ABC transporter ATP-binding protein	-
QY487_RS01965 (QY487_01965)	-	383567..385003 (-)	1437	WP_094247244.1	ABC transporter permease	-
QY487_RS01970 (QY487_01970)	-	385216..385899 (+)	684	WP_094247243.1	response regulator transcription factor	-
QY487_RS01975 (QY487_01975)	-	385886..387319 (+)	1434	WP_161941456.1	HAMP domain-containing sensor histidine kinase	-
QY487_RS01980 (QY487_01980)	rapC	387472..388620 (+)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
QY487_RS01985 (QY487_01985)	phrC	388604..388723 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
QY487_RS01990 (QY487_01990)	-	388873..388968 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
QY487_RS01995 (QY487_01995)	-	389063..390427 (-)	1365	WP_070081361.1	aspartate kinase	-
QY487_RS02000 (QY487_02000)	ceuB	390842..391795 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
QY487_RS02005 (QY487_02005)	-	391785..392732 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
QY487_RS02010 (QY487_02010)	-	392726..393484 (+)	759	WP_022552588.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=853424 QY487_RS01980 WP_003156336.1 387472..388620(+) (rapC) [Bacillus velezensis strain SSF6]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=853424 QY487_RS01980 WP_003156336.1 387472..388620(+) (rapC) [Bacillus velezensis strain SSF6]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAAGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTTTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGACGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568