Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QYQ96_RS11800 Genome accession   NZ_CP129421
Coordinates   2588696..2589229 (-) Length   177 a.a.
NCBI ID   WP_000168293.1    Uniprot ID   A0A067BLG6
Organism   Vibrio metoecus strain ZF102     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2583696..2594229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ96_RS11780 (QYQ96_11780) - 2584144..2584464 (-) 321 WP_158120258.1 MSHA biogenesis protein MshK -
  QYQ96_RS11785 (QYQ96_11785) gspM 2584457..2585107 (-) 651 WP_304572239.1 type II secretion system protein GspM -
  QYQ96_RS11790 (QYQ96_11790) - 2585104..2586546 (-) 1443 WP_304572240.1 PilN domain-containing protein -
  QYQ96_RS11795 (QYQ96_11795) csrD 2586560..2588572 (-) 2013 WP_055043593.1 RNase E specificity factor CsrD -
  QYQ96_RS11800 (QYQ96_11800) ssb 2588696..2589229 (-) 534 WP_000168293.1 single-stranded DNA-binding protein Machinery gene
  QYQ96_RS11805 (QYQ96_11805) qstR 2589521..2590165 (+) 645 WP_009372851.1 LuxR C-terminal-related transcriptional regulator Regulator
  QYQ96_RS11810 (QYQ96_11810) galU 2590337..2591209 (+) 873 WP_032469645.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QYQ96_RS11815 (QYQ96_11815) uvrA 2591365..2594187 (+) 2823 WP_304572241.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19715.93 Da        Isoelectric Point: 5.7626

>NTDB_id=853164 QYQ96_RS11800 WP_000168293.1 2588696..2589229(-) (ssb) [Vibrio metoecus strain ZF102]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKTTGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRTQQGGMPAQQGGMNAPQQGGWGQPQQPAKQHQPMQQSAPQQYA
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=853164 QYQ96_RS11800 WP_000168293.1 2588696..2589229(-) (ssb) [Vibrio metoecus strain ZF102]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACTTGGCGTGACAAAACCACGGGTGAGCAGAAGGAAAAAACCG
AGTGGCACCGTGTGACGCTGTATGGAAAATTAGCCGAAGTGGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTCTATATT
GAAGGTCAACTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAAGATCGTTATTCAACTGAAGTGGTTGTACAAGGTTA
CAATGGCATCATGCAGATGCTGGGTGGCCGTACTCAACAAGGTGGAATGCCTGCTCAGCAAGGCGGTATGAATGCACCAC
AGCAAGGTGGTTGGGGACAACCTCAGCAGCCAGCGAAGCAGCATCAGCCAATGCAACAATCGGCACCTCAACAGTATGCT
CAGCCGCAATACAACGAGCCACCGATGGATTTTGATGACGACATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A067BLG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

96.067

100

0.966
  ssb Glaesserella parasuis strain SC1401

52.747

100

0.542
  ssb Neisseria meningitidis MC58

47.568

100

0.497
  ssb Neisseria gonorrhoeae MS11

47.486

100

0.48