Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   QYQ96_RS11805 Genome accession   NZ_CP129421
Coordinates   2589521..2590165 (+) Length   214 a.a.
NCBI ID   WP_009372851.1    Uniprot ID   -
Organism   Vibrio metoecus strain ZF102     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2584521..2595165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ96_RS11790 (QYQ96_11790) - 2585104..2586546 (-) 1443 WP_304572240.1 PilN domain-containing protein -
  QYQ96_RS11795 (QYQ96_11795) csrD 2586560..2588572 (-) 2013 WP_055043593.1 RNase E specificity factor CsrD -
  QYQ96_RS11800 (QYQ96_11800) ssb 2588696..2589229 (-) 534 WP_000168293.1 single-stranded DNA-binding protein Machinery gene
  QYQ96_RS11805 (QYQ96_11805) qstR 2589521..2590165 (+) 645 WP_009372851.1 LuxR C-terminal-related transcriptional regulator Regulator
  QYQ96_RS11810 (QYQ96_11810) galU 2590337..2591209 (+) 873 WP_032469645.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QYQ96_RS11815 (QYQ96_11815) uvrA 2591365..2594187 (+) 2823 WP_304572241.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24862.75 Da        Isoelectric Point: 9.7352

>NTDB_id=853165 QYQ96_RS11805 WP_009372851.1 2589521..2590165(+) (qstR) [Vibrio metoecus strain ZF102]
MQRANYARTIYLLTTQPETLHPNIQAAITKLNLPVPIIEPERLLREYQSDKHKILLLDHSESNAIRQKLGPLKLTSPYFE
TILFNVEKRLKTEDLLTYGNLKGLFYANEETGFMAHGLGEIINGQNWLPRHVSNQLLHYYRYAFQTHQTQVTIDLTAREI
QILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=853165 QYQ96_RS11805 WP_009372851.1 2589521..2590165(+) (qstR) [Vibrio metoecus strain ZF102]
ATGCAACGAGCCAACTACGCACGCACTATTTACTTACTCACAACTCAACCCGAAACTTTACATCCCAATATTCAGGCGGC
GATAACCAAACTCAATCTTCCAGTTCCGATCATTGAACCAGAACGCCTACTGCGCGAATACCAGTCTGATAAACACAAAA
TTTTACTGCTCGACCATAGTGAAAGTAACGCCATTCGCCAGAAATTAGGCCCTCTAAAACTCACCAGCCCATACTTCGAA
ACGATTTTATTCAATGTGGAAAAACGCTTAAAAACGGAAGATTTACTCACCTACGGGAATTTAAAAGGCTTGTTCTATGC
TAATGAAGAAACTGGCTTTATGGCACATGGATTAGGTGAAATCATTAATGGACAAAACTGGTTACCACGCCATGTAAGTA
ACCAACTGCTGCATTATTACCGCTATGCGTTTCAAACTCATCAAACACAAGTAACCATTGACCTCACCGCTCGTGAAATC
CAAATTTTACGCTGCTTACAAACGGGGGCTTCCAATATGCAAATCGCAGAGAGCTTGTTTATCAGTGAGTTCACAGTGAA
ATCGCACCTTTATCAGATATTTAAAAAGTTAAATGTAAAAAACAGAGTCAAAGCCATTGCTTGGGTAAATCAGAATTTAT
TGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

90.187

100

0.902
  qstR Vibrio parahaemolyticus RIMD 2210633

50.233

100

0.505
  qstR Vibrio campbellii strain DS40M4

50.467

100

0.505