Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   V6T26_RS08395 Genome accession   NZ_CP145858
Coordinates   1815928..1816590 (-) Length   220 a.a.
NCBI ID   WP_410541222.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1810928..1821590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS08390 (V6T26_08385) hpf 1815302..1815850 (-) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  V6T26_RS08395 (V6T26_08390) comFC/cflB 1815928..1816590 (-) 663 WP_410541222.1 ComF family protein Machinery gene
  V6T26_RS08400 (V6T26_08395) comFA/cflA 1816571..1817890 (-) 1320 WP_155198371.1 DEAD/DEAH box helicase Machinery gene
  V6T26_RS08405 (V6T26_08400) - 1817945..1818571 (+) 627 WP_155198370.1 YigZ family protein -
  V6T26_RS08410 (V6T26_08405) cysK 1818673..1819599 (+) 927 WP_002883742.1 cysteine synthase A -
  V6T26_RS08415 (V6T26_08410) - 1819747..1820406 (-) 660 WP_002890017.1 CBS and ACT domain-containing protein -
  V6T26_RS08420 (V6T26_08415) - 1820541..1821251 (-) 711 WP_002883761.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26197.46 Da        Isoelectric Point: 8.6796

>NTDB_id=853094 V6T26_RS08395 WP_410541222.1 1815928..1816590(-) (comFC/cflB) [Streptococcus salivarius strain KSS11]
MKCLLCNDWIESVPKLRDLIMFNQRKEYSCRSCKHQFKNLSKERCQNCNKELYGDTCIDCKLWMKKGYIPKHLAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQDIKNNLKPFLKKGYTIVPVPLSEERLAERGFNQVEGLIEGIPYRDIFEKRDIEKQSS
KTREERLSQDNAFYLKEGINLPDKIIIVDDIYTTGSTLYQMVQLLEGIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=853094 V6T26_RS08395 WP_410541222.1 1815928..1816590(-) (comFC/cflB) [Streptococcus salivarius strain KSS11]
ATGAAGTGTCTGCTATGTAATGATTGGATTGAATCAGTACCAAAATTAAGAGACCTCATTATGTTTAACCAAAGAAAAGA
GTACTCTTGCCGATCTTGTAAACATCAGTTTAAAAACCTCTCAAAAGAAAGATGTCAAAATTGTAATAAAGAGTTATATG
GAGATACTTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCTATTTATCGATATGAAGAA
AATATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAATATTTCAACAAGATATTAAAAA
CAACTTAAAACCATTTTTGAAGAAAGGTTATACCATAGTGCCAGTCCCATTATCGGAAGAACGCTTGGCAGAAAGAGGAT
TCAACCAAGTTGAGGGATTGATAGAGGGAATTCCCTATCGGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCCTCA
AAAACACGCGAGGAGCGTCTAAGTCAAGATAATGCCTTCTATCTCAAGGAAGGTATAAATCTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACGGGTTCCACTTTATATCAGATGGTTCAACTGTTAGAAGGTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae TIGR4

44.595

100

0.45
  comFC/cflB Streptococcus mitis SK321

44.144

100

0.445