Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   QYN05_RS22030 Genome accession   NZ_CP129406
Coordinates   4129024..4129581 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA272     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4124024..4134581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYN05_RS22015 pilY1 4124116..4127607 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  QYN05_RS22020 pilX 4127619..4128206 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  QYN05_RS22025 pilW 4128203..4129027 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  QYN05_RS22030 pilV 4129024..4129581 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  QYN05_RS22035 - 4129572..4130078 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  QYN05_RS22040 - 4130184..4130693 (-) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  QYN05_RS22045 thiO 4130828..4131922 (+) 1095 WP_023518092.1 glycine oxidase ThiO -
  QYN05_RS22050 pilR 4131968..4133305 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=853095 QYN05_RS22030 WP_003119423.1 4129024..4129581(-) (pilV) [Pseudomonas aeruginosa strain PA272]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=853095 QYN05_RS22030 WP_003119423.1 4129024..4129581(-) (pilV) [Pseudomonas aeruginosa strain PA272]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995