Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QYP03_RS21605 Genome accession   NZ_CP129402
Coordinates   4780181..4781389 (-) Length   402 a.a.
NCBI ID   WP_301555779.1    Uniprot ID   -
Organism   Pseudomonas veronii strain OST1911     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4775181..4786389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYP03_RS21570 (QYP03_21570) - 4776138..4776887 (+) 750 WP_102617159.1 TIM barrel protein -
  QYP03_RS21575 (QYP03_21575) - 4777059..4777526 (+) 468 WP_057005137.1 hypothetical protein -
  QYP03_RS21580 (QYP03_21580) - 4777523..4778212 (+) 690 WP_126587498.1 energy-coupling factor ABC transporter permease -
  QYP03_RS21585 (QYP03_21585) - 4778289..4778504 (+) 216 WP_003171680.1 hypothetical protein -
  QYP03_RS21590 (QYP03_21590) yacG 4778501..4778701 (-) 201 WP_017845472.1 DNA gyrase inhibitor YacG -
  QYP03_RS21595 (QYP03_21595) coaE 4778698..4779321 (-) 624 WP_046384731.1 dephospho-CoA kinase -
  QYP03_RS21600 (QYP03_21600) pilD 4779318..4780184 (-) 867 WP_046384730.1 A24 family peptidase Machinery gene
  QYP03_RS21605 (QYP03_21605) pilC 4780181..4781389 (-) 1209 WP_301555779.1 type II secretion system F family protein Machinery gene
  QYP03_RS21610 (QYP03_21610) - 4781591..4782004 (+) 414 WP_017845468.1 pilin -
  QYP03_RS21615 (QYP03_21615) - 4782040..4783449 (+) 1410 WP_301555780.1 O-antigen ligase family protein -
  QYP03_RS21625 (QYP03_21625) - 4783698..4784003 (+) 306 WP_017845466.1 DUF6388 family protein -
  QYP03_RS21630 (QYP03_21630) nadC 4784047..4784895 (-) 849 WP_046384727.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43412.72 Da        Isoelectric Point: 9.7165

>NTDB_id=853044 QYP03_RS21605 WP_301555779.1 4780181..4781389(-) (pilC) [Pseudomonas veronii strain OST1911]
MTNAATTYAWEGINRQGRRVSGQTVGHDLARVKAQLRQQGICPGRVRKQSAGLPSLAAPIKPADIALFTRQLATLLKAGI
ALLQALDVISEGFDNRHMYRLVKGLKQEIGAGNTLASALRKQPRYFDDLYCNLVAAGEQAGALETLLERVADHLEKSERL
KARIKKAMTYPIAVIVVACLVSSLLLIHVVPQFQNLFTSVDSELPGFTLYVIALSEFLQQAWWMLALSLGAGGLGLRRAY
RVSPGFRHWLDAGLLKAPLAGTLLKKSAVARYARTLSTTFAAGVPLVQALDSVAAAASNQLFKQAIEHMRHDVSTGMPLN
RAMAASGLFPGMAIQMTAIGEESGTLEHMLEKVASHYESDVDTLVDQLTSLMEPLIMVVLGGIVGALVIALYLPVFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=853044 QYP03_RS21605 WP_301555779.1 4780181..4781389(-) (pilC) [Pseudomonas veronii strain OST1911]
ATGACCAACGCTGCCACGACATACGCCTGGGAAGGCATCAACCGCCAGGGACGCAGGGTGTCCGGGCAAACCGTCGGCCA
CGACCTCGCGCGGGTCAAGGCACAACTGCGCCAGCAAGGGATTTGCCCTGGCCGCGTGCGCAAACAATCCGCCGGCCTGC
CAAGCCTCGCTGCGCCGATCAAACCGGCGGACATTGCCCTGTTCACCCGCCAACTGGCGACACTGCTGAAGGCCGGCATT
GCCTTGCTGCAAGCCCTCGACGTGATCAGCGAAGGCTTCGACAACCGCCACATGTACAGGCTGGTAAAAGGCCTGAAACA
GGAGATCGGCGCCGGGAATACCCTGGCGTCGGCCCTGCGCAAACAGCCGCGCTACTTCGATGACCTGTACTGCAACCTGG
TGGCAGCGGGTGAGCAGGCCGGCGCCCTGGAAACCCTTCTGGAGCGGGTGGCGGATCACCTGGAAAAGAGCGAACGGCTC
AAGGCCCGGATCAAGAAGGCCATGACCTACCCCATCGCGGTCATCGTGGTCGCCTGCCTCGTCAGCAGTCTCTTGCTGAT
CCATGTGGTGCCGCAATTCCAGAACCTGTTCACCAGCGTCGACAGCGAGTTGCCCGGTTTTACTCTGTACGTGATTGCCT
TGTCCGAGTTCCTGCAACAAGCCTGGTGGATGCTGGCGCTCAGCCTGGGCGCGGGAGGTCTGGGGTTGCGCCGGGCCTAT
CGCGTATCGCCGGGTTTTCGTCATTGGCTGGATGCCGGTTTGTTGAAAGCGCCCCTGGCGGGCACACTGCTGAAAAAGTC
GGCAGTCGCCCGCTACGCACGCACGCTTTCAACTACGTTCGCGGCCGGAGTGCCGTTGGTGCAGGCCCTGGATTCAGTGG
CGGCCGCTGCCAGCAACCAGCTATTCAAACAGGCTATCGAACATATGCGTCACGATGTATCCACAGGCATGCCGCTGAAT
CGGGCCATGGCCGCCAGCGGTCTGTTCCCTGGCATGGCGATCCAGATGACGGCGATTGGTGAAGAATCCGGCACCCTGGA
GCACATGCTGGAAAAAGTCGCGAGCCACTATGAGTCGGACGTCGACACGCTGGTCGACCAACTCACCAGCCTAATGGAAC
CGCTGATCATGGTGGTGCTCGGCGGGATTGTCGGCGCTTTGGTAATCGCCCTGTACCTGCCGGTCTTCCAACTCGGTACG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.091

98.507

0.582
  pilC Acinetobacter baylyi ADP1

50.873

99.751

0.507
  pilC Acinetobacter baumannii D1279779

48.737

98.507

0.48
  pilC Legionella pneumophila strain ERS1305867

47.475

98.507

0.468
  pilC Vibrio cholerae strain A1552

39.44

97.761

0.386
  pilC Thermus thermophilus HB27

38.191

99.005

0.378
  pilC Vibrio campbellii strain DS40M4

38.168

97.761

0.373
  pilG Neisseria gonorrhoeae MS11

38.583

94.776

0.366