Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   V6T26_RS02925 Genome accession   NZ_CP145858
Coordinates   561536..563029 (+) Length   497 a.a.
NCBI ID   WP_048673698.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 556536..568029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS02915 (V6T26_02915) amiA 557353..559323 (+) 1971 WP_002884208.1 peptide ABC transporter substrate-binding protein Regulator
  V6T26_RS02920 (V6T26_02920) amiA 559505..561475 (+) 1971 WP_148512819.1 peptide ABC transporter substrate-binding protein Regulator
  V6T26_RS02925 (V6T26_02925) amiC 561536..563029 (+) 1494 WP_048673698.1 ABC transporter permease Regulator
  V6T26_RS02930 (V6T26_02930) amiD 563029..563955 (+) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  V6T26_RS02935 (V6T26_02935) amiE 563965..565050 (+) 1086 WP_021143811.1 ABC transporter ATP-binding protein Regulator
  V6T26_RS02940 (V6T26_02940) - 565043..565972 (+) 930 WP_021143812.1 ATP-binding cassette domain-containing protein -
  V6T26_RS02945 (V6T26_02945) - 566024..566809 (-) 786 WP_021143813.1 hypothetical protein -
  V6T26_RS02950 (V6T26_02950) - 566821..567519 (-) 699 WP_410541400.1 ABC transporter ATP-binding protein -
  V6T26_RS02955 (V6T26_02955) - 567524..567901 (-) 378 WP_021143815.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55955.70 Da        Isoelectric Point: 9.9933

>NTDB_id=853046 V6T26_RS02925 WP_048673698.1 561536..563029(+) (amiC) [Streptococcus salivarius strain KSS11]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKTNYENTIYERMGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYAHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKVSSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSISTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTMIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=853046 V6T26_RS02925 WP_048673698.1 561536..563029(+) (amiC) [Streptococcus salivarius strain KSS11]
ATGAAAAAATATATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCTAAGACAGCTGATTCTAAGA
CTAACTATGAAAATACAATCTATGAACGTATGGGTTATATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTCGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATTTACCAAAAATATGTGGATAGTTTAGGACG
TGGCTGGCGTTTGCATCAATTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCGGTGCTTGAACGTGTGTTTG
GCTTCTATGCACACCTCTTTGAATTTGACAATACCGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTCGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAACAG
TCAGTTCCCATTTGTTCACCAAAACTTTGTTAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGTCAAGGGCAAACACAAAGCTCTGAGGTCAACTTCCCTACTGGTAAGAAAGTATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCTAGGGATCGTTCTTACTATGGTGATGACCCATACAC
ATCTACTAAGAGTCGCTACCAATACCCATCAATGGTGACAAGTTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAATACACTCTTTGATAGTATTTCAACTGGTGTCTTG
ACTTTCTTGCTCTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTTTTGTCTACACCAGGTC
TTGCCATTTGGATTCGTCGTTACATGATTGACTTGCAGTCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATCGTTAG
TGTTATCACAGGGGCAACCTTGACAGAAACAATCTTTGCCTACCCTGGTATGGGTAAAATGTTGATTGACTCTGTCCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCCCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATGATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

98.793

100

0.988
  amiC Streptococcus thermophilus LMG 18311

96.982

100

0.97
  amiC Streptococcus thermophilus LMD-9

96.579

100

0.966