Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   V6T26_RS02930 Genome accession   NZ_CP145858
Coordinates   563029..563955 (+) Length   308 a.a.
NCBI ID   WP_002884564.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 558029..568955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS02920 (V6T26_02920) amiA 559505..561475 (+) 1971 WP_148512819.1 peptide ABC transporter substrate-binding protein Regulator
  V6T26_RS02925 (V6T26_02925) amiC 561536..563029 (+) 1494 WP_048673698.1 ABC transporter permease Regulator
  V6T26_RS02930 (V6T26_02930) amiD 563029..563955 (+) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  V6T26_RS02935 (V6T26_02935) amiE 563965..565050 (+) 1086 WP_021143811.1 ABC transporter ATP-binding protein Regulator
  V6T26_RS02940 (V6T26_02940) - 565043..565972 (+) 930 WP_021143812.1 ATP-binding cassette domain-containing protein -
  V6T26_RS02945 (V6T26_02945) - 566024..566809 (-) 786 WP_021143813.1 hypothetical protein -
  V6T26_RS02950 (V6T26_02950) - 566821..567519 (-) 699 WP_410541400.1 ABC transporter ATP-binding protein -
  V6T26_RS02955 (V6T26_02955) - 567524..567901 (-) 378 WP_021143815.1 GntR family transcriptional regulator -
  V6T26_RS02960 (V6T26_02960) - 568083..568877 (+) 795 WP_021143816.1 HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34609.70 Da        Isoelectric Point: 9.7054

>NTDB_id=853047 V6T26_RS02930 WP_002884564.1 563029..563955(+) (amiD) [Streptococcus salivarius strain KSS11]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTTVMLGILIAIILMSFIYPMFSKFDFNDVSKVNDFSVR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVAIGLVVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTPKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=853047 V6T26_RS02930 WP_002884564.1 563029..563955(+) (amiD) [Streptococcus salivarius strain KSS11]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCGCCGGCCTA
TTCATACTGGAAATCGGTGATGCGTCAGTTCTTCAAGAAAAAGTCAACAACTGTTATGTTGGGTATCTTGATTGCTATCA
TTTTGATGAGCTTTATCTACCCAATGTTTTCAAAATTTGACTTCAATGACGTGTCTAAGGTTAATGACTTTAGTGTGCGT
TATGTGCATCCAAATGCTCAATACTGGTTCGGTACAGACAGTAATGGTAAGTCTCTCTTTGACAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAACGTTGCTATTGGTTTAGTCGTTGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCTGCCCTCCTTGTAGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTCTGGAATATGATCTTTGCCATGACTGTTACAGGGTGGATTGGTATTGCCTATAC
TATCCGTATTCAAATCATGCGTTACCGTGATTTGGAGTATAACTTGGCTTCTCGTACACTGGGAACACCAACTCCTAAGA
TTGTGGTTAAAAACATCATGCCACAACTAGTGTCAGTTATCGTAACTATGGCTAGTCAGCTCTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCTTACTTTGGTTTGGGGCTTCCCGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTCTCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

98.701

100

0.987
  amiD Streptococcus thermophilus LMG 18311

96.104

100

0.961
  amiD Streptococcus thermophilus LMD-9

96.104

100

0.961