Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QYP03_RS16400 Genome accession   NZ_CP129402
Coordinates   3593198..3594694 (+) Length   498 a.a.
NCBI ID   WP_104904255.1    Uniprot ID   -
Organism   Pseudomonas veronii strain OST1911     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3588198..3599694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYP03_RS16370 (QYP03_16370) - 3588710..3589405 (+) 696 WP_301555598.1 HAD-IA family hydrolase -
  QYP03_RS16375 (QYP03_16375) sutA 3589520..3589846 (-) 327 WP_017845175.1 transcriptional regulator SutA -
  QYP03_RS16380 (QYP03_16380) - 3589950..3590375 (-) 426 WP_017845176.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QYP03_RS16385 (QYP03_16385) - 3590588..3591925 (-) 1338 WP_046381663.1 ammonium transporter -
  QYP03_RS16390 (QYP03_16390) glnK 3591959..3592297 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  QYP03_RS16395 (QYP03_16395) - 3592720..3592983 (+) 264 WP_017845178.1 accessory factor UbiK family protein -
  QYP03_RS16400 (QYP03_16400) comM 3593198..3594694 (+) 1497 WP_104904255.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QYP03_RS16405 (QYP03_16405) - 3595079..3595945 (-) 867 WP_301555599.1 DMT family transporter -
  QYP03_RS29325 - 3596022..3596339 (-) 318 WP_363325605.1 cation:proton antiporter -
  QYP03_RS16410 (QYP03_16410) - 3596591..3596719 (+) 129 WP_301555600.1 hypothetical protein -
  QYP03_RS16415 (QYP03_16415) glyA 3596730..3597995 (-) 1266 WP_046381661.1 serine hydroxymethyltransferase -
  QYP03_RS16420 (QYP03_16420) - 3598021..3598836 (-) 816 WP_046381660.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53364.54 Da        Isoelectric Point: 8.4301

>NTDB_id=853037 QYP03_RS16400 WP_104904255.1 3593198..3594694(+) (comM) [Pseudomonas veronii strain OST1911]
MSLAIVHSRAQIGVEAPAVSVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPSRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTQMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRSVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPFKSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
HEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGDPSARCRCTPEQVQRYRNKLSGPLLDRIDLHLTVAREITALNPAPQP
GDNTSTASALVAQARDRQQQRQGCANAFLDLPGLRQHCALSRPDEAWLESACERLTLSLRAAHRLLKVARTLADLEQGQR
IARHHLAEALQYRPAPST

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=853037 QYP03_RS16400 WP_104904255.1 3593198..3594694(+) (comM) [Pseudomonas veronii strain OST1911]
ATGTCCCTCGCCATCGTCCACAGTCGCGCCCAGATCGGCGTCGAAGCCCCTGCCGTCAGCGTCGAAGTACACATGGCCAA
TGGTCTGCCATCGCTCACCCTGGTGGGTTTGCCGGAAACCGCCGTCAAGGAAAGCAAGGACCGCGTGCGCAGTGCCATCC
TCAACTCCGCGCTGCAATACCCGTCCCGCCGCATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGACCTGGCGATAGCCCTCGGGATTCTCGCGGCGAGCGTGCAGGTGCCGACGCAGATGCTCGACGACGTGGAATGCCT
GGGGGAATTGGCGCTATCGGGCGAGGTACGCGCAGTGAAAGGTGTGTTGCCGGCAGCGCTCGCGGCGCGCAAGGCCGGGC
GCAGCGTGATCGTGCCCCGGGCGAATGCCGAAGAGGCCTGCCTGGCATCGGGGTTGAAGGTGATTGCGGTGGACCACCTG
CTACAGGTGGTGGCGCACCTGAATGGGCATGTGCCGATCGAGCCCTTCAAGTCCGACGGTCTGCTGTACTTGAACAAACC
TTATCCGGACCTCAGCGAAGTCCAGGGCCAACTCGCCGCCAAACGCGCACTGCTGATCGCTGCGGCAGGCGCGCATAACC
TGTTGTTCAGCGGCCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCGGGTTTGCTGCCGCCGCTGAGTGAG
CACGAAGCGCTGGAAGTGGCAGCGATTCAATCAGTGGTCAGCCTGGCGCCCCTGAGTCATTGGCCCCATCGGCCGTTTCG
CCAGCCGCACCATTCGGCCTCCGGCCCGGCGCTGGTGGGTGGAGGGTCAAAGCCGCAACCGGGGGAAATCACCTTGGCCC
ACCATGGCGTGCTGTTCCTGGATGAGCTGCCGGAGTTTGATCGCAAGGTGCTCGAGGTTTTGCGCGAGCCACTGGAGTCG
GGGCATATCGTGATCTCCCGCGCCCGCGACCGCGTGAGTTTCCCGGCGCGCTTTCAACTGGTCGCCGCAATGAACCCCTG
CCCTTGCGGTTACATGGGCGACCCCAGCGCGCGCTGTCGCTGTACGCCGGAGCAGGTCCAGCGCTATCGCAACAAACTCT
CCGGGCCGTTGCTGGACCGGATCGACCTGCACCTGACCGTCGCTCGCGAAATCACCGCGCTGAACCCGGCCCCTCAGCCC
GGCGACAACACGTCCACCGCCTCGGCACTGGTAGCCCAGGCCCGGGACCGCCAGCAACAGCGCCAGGGCTGCGCCAATGC
GTTCCTCGACCTACCGGGGTTGCGCCAGCATTGCGCGCTGTCGAGGCCGGATGAAGCCTGGCTGGAAAGCGCCTGCGAGC
GCCTGACCCTGTCCCTTCGCGCGGCCCACCGCCTGCTCAAGGTCGCCCGCACGCTGGCGGATCTGGAGCAAGGACAAAGA
ATTGCTCGTCATCATCTGGCGGAGGCATTGCAGTACCGACCAGCGCCCTCCACCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.96

99.398

0.556
  comM Glaesserella parasuis strain SC1401

55.289

100

0.556
  comM Vibrio cholerae strain A1552

55.556

99.398

0.552
  comM Haemophilus influenzae Rd KW20

53.8

100

0.54
  comM Legionella pneumophila str. Paris

50.806

99.598

0.506
  comM Legionella pneumophila strain ERS1305867

50.806

99.598

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.23

100

0.468