Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V6T01_RS07305 Genome accession   NZ_CP145856
Coordinates   1603097..1605067 (-) Length   656 a.a.
NCBI ID   WP_002884208.1    Uniprot ID   J7TF98
Organism   Streptococcus salivarius strain KSS1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1598097..1610067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS07290 (V6T01_07265) amiD 1598465..1599391 (-) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  V6T01_RS07295 (V6T01_07270) amiC 1599391..1600884 (-) 1494 WP_048673698.1 ABC transporter permease Regulator
  V6T01_RS07300 (V6T01_07275) amiA 1600945..1602915 (-) 1971 WP_148512819.1 peptide ABC transporter substrate-binding protein Regulator
  V6T01_RS07305 (V6T01_07280) amiA 1603097..1605067 (-) 1971 WP_002884208.1 peptide ABC transporter substrate-binding protein Regulator
  V6T01_RS07310 (V6T01_07285) pta 1605303..1606286 (-) 984 WP_155198472.1 phosphate acetyltransferase -
  V6T01_RS07315 (V6T01_07290) - 1606302..1607198 (-) 897 WP_410541399.1 RluA family pseudouridine synthase -
  V6T01_RS07320 (V6T01_07295) - 1607195..1608031 (-) 837 WP_002884507.1 NAD kinase -
  V6T01_RS07325 (V6T01_07300) - 1608003..1608677 (-) 675 WP_014634828.1 GTP pyrophosphokinase family protein -
  V6T01_RS07330 (V6T01_07305) - 1608773..1609348 (+) 576 WP_022496737.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71955.73 Da        Isoelectric Point: 4.8199

>NTDB_id=852965 V6T01_RS07305 WP_002884208.1 1603097..1605067(-) (amiA) [Streptococcus salivarius strain KSS1]
MKKSKWLALAGVALLSVGALAACSSKSSTSGTTYGYVYNSDPESLDYITSNTGPTKIAVTNGVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADGKSGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDYTLQYTLKKPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFILKSLTAKSSIELTKNENYWDKK
NVHFDAIKLSYYDGSDQEALERGFTDGAYSLARVYPTSSNYASVEKNYKDNIYYTAPGASTSAIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQMNGKDGAALALRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
TDGQDGLYNAEKAKTEFAKAKETLQADGVQFPIHLDLPVDQSSKINVAQAQSLKQTIEQSLGSDNVVIDVNQLSSDDIQN
ATLNAANAAAEDWDISNGVIWGPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLDSAASETTDLN
ARYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASMQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=852965 V6T01_RS07305 WP_002884208.1 1603097..1605067(-) (amiA) [Streptococcus salivarius strain KSS1]
ATGAAAAAAAGCAAATGGTTAGCCCTTGCGGGTGTCGCCCTTCTAAGTGTTGGTGCCTTAGCGGCTTGTTCTTCTAAGTC
AAGTACTAGTGGAACGACTTATGGTTATGTTTATAATTCAGATCCAGAATCATTGGATTACATCACTTCAAATACAGGAC
CTACAAAAATTGCTGTAACTAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTCCCTTCAGTAGCT
GAAGATTGGTCTGTCTCTCAAGATGGTCTGACTTATACTTATAAAATCCGTAAGGGAGTTAAATGGTATACTTCTGATGG
TGAAGAGTATGCTGATGTGACTGCTAAGGACTTTGTGACTGGTCTTAAGCATGCGGCTGATGGCAAGTCTGGAGCCCTCT
ATTTGGTACAAGATTCTATTGCTGGATTGTCTGACTACCTTTCTGGTGCCAATAAAGATTTCTCAAATGTTGGCGTTAAA
GCAATCGACGATTATACATTGCAATACACCCTTAAAAAACCGGAGCCATACTGGAACTCTAAAACAACTTATGGCTTGCT
CTTCCCAGTTAACGAAGACTTTCTTAAGAACAAAGGGAAAGATTTTGGTAAGTCAACAGACCCAACATCTATCCTCTATA
ATGGTCCTTTCATTCTCAAATCTTTGACAGCTAAATCATCTATTGAGTTGACTAAGAATGAAAATTATTGGGACAAGAAG
AATGTACACTTTGATGCCATCAAATTGTCATATTATGACGGTTCGGATCAAGAGGCTCTAGAACGTGGTTTCACGGATGG
TGCCTATAGTTTGGCTCGTGTCTACCCAACGAGTTCTAACTATGCTTCAGTTGAGAAAAACTATAAAGATAATATTTATT
ACACAGCACCAGGTGCATCTACATCGGCTATTGGTGTGAATATTGACCGCCAAAGCTATAAATTCTCAGCCAAGAAGACG
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTCCGTCAATCAATCAACTTCGCAATTGATCGTAC
GGCTTATCAATCACAAATGAATGGTAAAGATGGTGCAGCTCTAGCTCTACGTAACCTCTTTGTTCCTTCTGATTTTGTCA
GTGCAGGTGATAAGACCTTTGGAGATCTTGTAACAGAGAAAATGTCCTCTTATGGTGATGAATGGTCAGGTGTAAACTTT
ACTGATGGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGAAACTCTCCAAGCAGA
TGGTGTTCAATTCCCAATTCACTTGGACCTTCCTGTTGACCAAAGTTCTAAAATCAATGTTGCTCAGGCCCAATCTTTGA
AACAAACCATTGAGCAATCATTGGGTAGCGATAATGTGGTTATCGATGTTAACCAATTATCATCTGATGACATACAAAAT
GCAACCCTTAACGCGGCTAATGCAGCGGCAGAAGACTGGGATATTTCAAACGGTGTCATTTGGGGTCCAGACTATCAAGA
CCCATCAACTTACCTTGATATCTTTAAGACAACTTCAAGTGAAAATACCAAGACTTTCATGGGGTATGATGATCCAAACA
ATGCTGCCGCAGCTCAAGTAGGTCTTAAAGATTATGACGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACCTCAAC
GCTCGTTACGACCGTTATGCTCAAGCCCAAGCTTGGTTGGAAGATAGCTCTCTTGTCATTCCATTGACTGTTGGTAACGG
TGCAGCACCAGTTATCTCACGTTTGACACCATTTACGGGTGCTAGCATGCAGGTGGGTGATAAGAACTCATCAGACTACT
TCAAATATGTGAAACCACAGGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7TF98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

99.085

100

0.991
  amiA3 Streptococcus thermophilus LMG 18311

90.411

100

0.905
  amiA3 Streptococcus thermophilus LMD-9

90.259

100

0.904