Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   V6T01_RS07295 Genome accession   NZ_CP145856
Coordinates   1599391..1600884 (-) Length   497 a.a.
NCBI ID   WP_048673698.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1594391..1605884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS07265 (V6T01_07240) - 1594519..1594896 (+) 378 WP_021143815.1 GntR family transcriptional regulator -
  V6T01_RS07270 (V6T01_07245) - 1594901..1595599 (+) 699 WP_410541400.1 ABC transporter ATP-binding protein -
  V6T01_RS07275 (V6T01_07250) - 1595611..1596396 (+) 786 WP_021143813.1 hypothetical protein -
  V6T01_RS07280 (V6T01_07255) - 1596448..1597377 (-) 930 WP_021143812.1 ATP-binding cassette domain-containing protein -
  V6T01_RS07285 (V6T01_07260) amiE 1597370..1598455 (-) 1086 WP_021143811.1 ABC transporter ATP-binding protein Regulator
  V6T01_RS07290 (V6T01_07265) amiD 1598465..1599391 (-) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  V6T01_RS07295 (V6T01_07270) amiC 1599391..1600884 (-) 1494 WP_048673698.1 ABC transporter permease Regulator
  V6T01_RS07300 (V6T01_07275) amiA 1600945..1602915 (-) 1971 WP_148512819.1 peptide ABC transporter substrate-binding protein Regulator
  V6T01_RS07305 (V6T01_07280) amiA 1603097..1605067 (-) 1971 WP_002884208.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55955.70 Da        Isoelectric Point: 9.9933

>NTDB_id=852963 V6T01_RS07295 WP_048673698.1 1599391..1600884(-) (amiC) [Streptococcus salivarius strain KSS1]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKTNYENTIYERMGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYAHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKVSSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSISTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTMIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=852963 V6T01_RS07295 WP_048673698.1 1599391..1600884(-) (amiC) [Streptococcus salivarius strain KSS1]
ATGAAAAAATATATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCTAAGACAGCTGATTCTAAGA
CTAACTATGAAAATACAATCTATGAACGTATGGGTTATATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTCGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATTTACCAAAAATATGTGGATAGTTTAGGACG
TGGCTGGCGTTTGCATCAATTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCGGTGCTTGAACGTGTGTTTG
GCTTCTATGCACACCTCTTTGAATTTGACAATACCGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTCGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAACAG
TCAGTTCCCATTTGTTCACCAAAACTTTGTTAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGTCAAGGGCAAACACAAAGCTCTGAGGTCAACTTCCCTACTGGTAAGAAAGTATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCTAGGGATCGTTCTTACTATGGTGATGACCCATACAC
ATCTACTAAGAGTCGCTACCAATACCCATCAATGGTGACAAGTTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAATACACTCTTTGATAGTATTTCAACTGGTGTCTTG
ACTTTCTTGCTCTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTTTTGTCTACACCAGGTC
TTGCCATTTGGATTCGTCGTTACATGATTGACTTGCAGTCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATCGTTAG
TGTTATCACAGGGGCAACCTTGACAGAAACAATCTTTGCCTACCCTGGTATGGGTAAAATGTTGATTGACTCTGTCCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCCCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATGATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

98.793

100

0.988
  amiC Streptococcus thermophilus LMG 18311

96.982

100

0.97
  amiC Streptococcus thermophilus LMD-9

96.579

100

0.966